AT5G61940.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ubiquitin carboxyl-terminal hydrolase-related protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ubiquitin carboxyl-terminal hydrolase-related protein; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Zinc finger, C2H2-type (InterPro:IPR007087), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase-related protein (TAIR:AT5G61950.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:24868155..24872717 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 124654.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.15 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.45 | ||||||||||||||||||||||||||||||||
| Length | 1094 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDSSFMEDDE GAQLLEDAQK LFDNGDHIKA LEIIEDLILV HGEDITAWRL HIREGKMFDD LAKKTEDPDV KFAYFLASAE CFSEDGTLSP ICASSLFLLG 0101: QMLGSVLYYK KSLKKAKQGL SVNSLPSKSD SVAQLSLQAQ RELDKKNKAL LSLINDAESE IASSKTLVGS TVKNTKPKVV ESKKSQDPRE DAFKGLRSYW 0201: VGLDVKIKRD FMKVSIAKLT SFVEGVGHYK EEREVLEKVL TSAKEDREWK FWICRTLCSR KFSSAEECKN HLEQQHAADF KPSSEKDIVK RIGKDWVRKI 0301: IVGSWEPVDA VAATEMIKNQ LADVKAFASK AKNGWSKEWP LAVDEERSKL LKEIKLLLVS FCDLKILSCS IRDWMMCFPA KHLGKLEVSE QSLVDSRLVE 0401: TPHSICFLES QELTQILEFL NHIKCKRNDG TDLVCRAVDS VLGRTRVKEK IDFDPQFSFL LLDKRLLKIN DDQFDDDEGT INVFDPSVHY AKTPVHGDDI 0501: ISWLTDYNSV DKTFPRPIRE HNLDIWLAVL KAVKFTCRTL GNKYAKKLQV VDYDAALTDV ENMCVRENER RRNLPEDQWS RYASLLCDVC EERVPENSLT 0601: TKLFVCAVRD VFEGALHPTL DFLDLEDCLN FIREHKSLSD DKVLQAIDLL KSVVTQKVLL MDTKILLIDN SRMSLLNNLT RLSAFDNRTY ILQLLKPFLL 0701: NEIVNMESKA KSDAAEADLL NELEKEKLQS KEKPQSKEKP QSKKRRDRSK KKPSTSISSS LDKTVEHKPS VNLKPESTSS SLRTIEEGSM EPEDALASET 0801: GQLKISSKTE IQVEATKDDP DMRNMPGEDS LSEHLESVAG EATTRYNSAF DMTLKALLNI KVLKEDLLNQ PFQDHQEEQV PIALQNLFTA VVSEAIQDEG 0901: VYSCLLRDLL TSQEEVISMS SDAANVVVAI LDFWRCWKNP ERESLKDYKL STAKLLWHCY GSRYNQRTEE GCGKTNSVQH ISSRCPPIFT IVLEWENSAT 1001: ENEISETTKA FDWEIDISRL YEEGLAPNTK YRLVSMVGYS EGDEEHICLA YEENRWVNLR RECIAGEDVG DWKNVVRFCG ERKVRPEILL YEAA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)