AT4G33170.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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| FP Images |
Arabidopsis cell culture (mitochondrial marker)
Arabidopsis cell culture (endoplasmic reticulum marker)
Arabidopsis cell culture (plastidal marker)
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G09950.1); Has 55398 Blast hits to 13784 proteins in 253 species: Archae - 0; Bacteria - 15; Metazoa - 97; Fungi - 52; Plants - 54672; Viruses - 0; Other Eukaryotes - 562 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:15995701..15998673 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 110821.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.04 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.04 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 990 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRSTSKAIPF SFHTSLIVQC LRPLRFTSAA SPSSSSSSSS QWFGFLRNAI TSSDLMLGKC THARILTFEE NPERFLINNL ISMYSKCGSL TYARRVFDKM 101: PDRDLVSWNS ILAAYAQSSE CVVENIQQAF LLFRILRQDV VYTSRMTLSP MLKLCLHSGY VWASESFHGY ACKIGLDGDE FVAGALVNIY LKFGKVKEGK 201: VLFEEMPYRD VVLWNLMLKA YLEMGFKEEA IDLSSAFHSS GLNPNEITLR LLARISGDDS DAGQVKSFAN GNDASSVSEI IFRNKGLSEY LHSGQYSALL 301: KCFADMVESD VECDQVTFIL MLATAVKVDS LALGQQVHCM ALKLGLDLML TVSNSLINMY CKLRKFGFAR TVFDNMSERD LISWNSVIAG IAQNGLEVEA 401: VCLFMQLLRC GLKPDQYTMT SVLKAASSLP EGLSLSKQVH VHAIKINNVS DSFVSTALID AYSRNRCMKE AEILFERHNF DLVAWNAMMA GYTQSHDGHK 501: TLKLFALMHK QGERSDDFTL ATVFKTCGFL FAINQGKQVH AYAIKSGYDL DLWVSSGILD MYVKCGDMSA AQFAFDSIPV PDDVAWTTMI SGCIENGEEE 601: RAFHVFSQMR LMGVLPDEFT IATLAKASSC LTALEQGRQI HANALKLNCT NDPFVGTSLV DMYAKCGSID DAYCLFKRIE MMNITAWNAM LVGLAQHGEG 701: KETLQLFKQM KSLGIKPDKV TFIGVLSACS HSGLVSEAYK HMRSMHGDYG IKPEIEHYSC LADALGRAGL VKQAENLIES MSMEASASMY RTLLAACRVQ 801: GDTETGKRVA TKLLELEPLD SSAYVLLSNM YAAASKWDEM KLARTMMKGH KVKKDPGFSW IEVKNKIHIF VVDDRSNRQT ELIYRKVKDM IRDIKQEGYV 901: PETDFTLVDV EEEEKERALY YHSEKLAVAF GLLSTPPSTP IRVIKNLRVC GDCHNAMKYI AKVYNREIVL RDANRFHRFK DGICSCGDYW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)