AT5G48010.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.941 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : thalianol synthase 1 | ||||||||||||||||
| Curator Summary (TAIR10) |
Encodes an oxidosqualene cyclase involved in the biosynthesis of thalianol, a tricyclic triterpenoid of unknown function. Overexpression of THAS leads to dwarfing in the aerial tissues of Arabidopsis plants, but increases their root length. THAS is part of a small operon-like cluster of genes (with At5g48000 (THAH) and At5g47990 (THAD)) involved in thalianol metabolism. | ||||||||||||||||
| Computational Description (TAIR10) |
thalianol synthase 1 (THAS1); CONTAINS InterPro DOMAIN/s: Terpene synthase, conserved site (InterPro:IPR002365), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Squalene cyclase (InterPro:IPR018333), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: baruol synthase 1 (TAIR:AT4G15370.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:19457001..19461538 | ||||||||||||||||
| Molecular Weight (calculated) | 87257.50 Da | ||||||||||||||||
| IEP (calculated) | 7.03 | ||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||
| Length | 758 amino acids | ||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MWRLRTGPKA GEDTHLFTTN NYAGRQIWEF DANAGSPQEI AEVEDARHKF SDNTSRFKTT ADLLWRMQFL REKKFEQKIP RVIIEDARKI KYEDAKTALK 101: RGLLYFTALQ ADDGHWPAEN SGPNFYTPPF LICLYITGHL EKIFTPEHVK ELLRHIYNMQ NEDGGWGLHV ESHSVMFCTV INYVCLRIVG EEVGHDDQRN 201: GCAKAHKWIM DHGGATYTPL IGKALLSVLG VYDWSGCNPI PPEFWLLPSS FPVNGGTLWI YLRDTFMGLS YLYGKKFVAP PTPLILQLRE ELYPEPYAKI 301: NWTQTRNRCG KEDLYYPRSF LQDLFWKSVH MFSESILDRW PLNKLIRQRA LQSTMALIHY HDESTRYITG GCLPKAFHML ACWIEDPKSD YFKKHLARVR 401: EYIWIGEDGL KIQSFGSQLW DTALSLHALL DGIDDHDVDD EIKTTLVKGY DYLKKSQITE NPRGDHFKMF RHKTKGGWTF SDQDQGWPVS DCTAESLECC 501: LFFESMPSEL IGKKMDVEKL YDAVDYLLYL QSDNGGIAAW QPVEGKAWLE LLNIMIFRYV ECTGSAIAAL TQFNKQFPGY KNVEVKRFIT KAAKYIEDMQ 601: TVDGSWYGNW GVCFIYGTFF AVRGLVAAGK TYSNCEAIRK AVRFLLDTQN PEGGWGESFL SCPSKKYTPL KGNSTNVVQT AQALMVLIMG DQMERDPLPV 701: HRAAQVLINS QLDNGDFPQQ EIMGTFMRTV MLHFPTYRNT FSLWALTHYT HALRRLLP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)