AT5G42580.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.979 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cytochrome P450, family 705, subfamily A, polypeptide 12 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
a member of the cytochrome P450 family | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cytochrome P450, family 705, subfamily A, polypeptide 12 (CYP705A12); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 705, subfamily A, polypeptide 3 (TAIR:AT4G15360.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:17023646..17025229 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 56885.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.31 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.09 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 499 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAELIIVDFQ NISIFILLCL FSFLCYALFF KKPKGFDLPP SPPSLPIIGH LHHLLSSSLP HKSFQKLSFK YGPLLHLRIF NFPMVLVSSA SMAYEVFRTN 101: DVNVSYRFVP VNKDSLVFGS SGFVTAPYGD YWKFMKKLIS TKLLRPHALE LSKGNRAEEL RRFCLDLQGK ARKKESVEIG KVALKLTNNI ICRMSMGRSC 201: SEKNGVAERA RELVNKSFAL SVKLFFSNMF RKDIMGVSRE FDEFLERILV EHEENLEGDQ DRDMIDHLLE AYRNEEAEYK ITRKQIKSLI VEIFLGGTDS 301: SAQTIQWTMA EILNNPGVLE KLRAEIDSVV GGKRLIQESD LPNLPYLQAV VKEGLRLHPS APVLLRVFGE SCEVKEFYVP EKTTLVVNLY AVNRDPDSWE 401: DPDMFKPERF LVSSISGDEE KIREQAVKYV TFGGGRRTCP AVKLAHIFME TAIGAMVQCF DWRIKGEKVY MEEAVSGLSL KMAHPLKCTP VVRFDPFSF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)