AT5G46920.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 ASURE: mitochondrion What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Intron maturase, type II family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Intron maturase, type II family protein; FUNCTIONS IN: RNA binding, RNA-directed DNA polymerase activity; INVOLVED IN: RNA-dependent DNA replication, RNA splicing; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Intron maturase, type II (InterPro:IPR000442), RNA-directed DNA polymerase (reverse transcriptase) (InterPro:IPR000477); BEST Arabidopsis thaliana protein match is: Intron maturase, type II family protein (TAIR:AT1G30010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:19053668..19055875 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 85184.50 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.76 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.54 | ||||||||||||||||||||||||||||
| Length | 735 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRRSFSVLGP YKWLKPSSTY TNVYCFVTNP PLISNPNNGS AIFRYLSYFA PQQRRQQQQA PDPDDPANLL KEDGVSLCSQ MWLENFKEPD KTATNLTSYL 101: RRFELWVLAY QKVCCDELGA YVPRSSIQRS ALENLLALRN SVLDDRFKWG SRLDFYIKSP RDKTDYESLS KRKIKAILTT TQPTPFQDRI VQEVLLMILE 201: PIYESRFSQK SFAFRPGRTA HTVLRVIRRN FAGYLWYVKG DLSVVLDGMK VGFVISSLMR DVRDKKVIDL IKSALVTPVV TSKVEDGEKK KTKKRKYQKK 301: RVLAEDEPKP DPYWLETFFG FAPEEAGKSP QWGHCGILSP LLVNVCLDEL DRWMETKVKD FYRPSKSDVI WNNPEGEADQ GNTSWPEFVP TSGPDKTRKM 401: DYVRYGGHIL IGVRGPRADA ATLRKELIEF VDQKYMLRLD NENLPIEHIT KGIMFLDHVL CRRVVYPTLR YTATGGKIIS EKGVGTLLSV TASLKQCIKQ 501: FRKLLFIKGD RDPDPQPCFR MFHATQAHTN NQMNKFLTTI AEWYRFADNR KKIVNFCSYI IRGSLAKLYA AKYKLRSRAK VYKFANRNLS LPLLQKKGQS 601: PEYQNLLRMG LAESVDGLVY TRMSLVPETD YSPFPGNWRP EHEKFLIEYL TLDEPKTLEE QKRFIREKGL VSPQDYTSML VWNYKRNAIP MDQVSILKDQ 701: PFLLGSSSTY NRDNDDQKNK EEDEDSEDGL RIARM |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)