AT4G33495.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ubiquitin carboxyl-terminal hydrolase family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
A member of the RPD gene family - there are13 annotated genes and one EST encoding RPD1-like proteins in Arabidopsis. Shows no homology to any protein of known function. Abundant expression found in the shoot apex and the root. rpd1 mutant is a temperature-sensitive mutant isolated on the basis of the impairment in adventitious roots formation in hypocotyl region. Also, disruption of the RPD1 gene by a T-DNA insertion caused embryogenesis arrest at the globular to transition stages. This phenotype is consistent with the hypothesized function of RPD1 in the maintenance of active cell proliferation. | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ROOT PRIMORDIUM DEFECTIVE 1 (RPD1); CONTAINS InterPro DOMAIN/s: RNA recognition domain, plant (InterPro:IPR021099); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase family protein (TAIR:AT5G45790.2); Has 413 Blast hits to 409 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 413; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:16111349..16112578 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48289.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.03 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||||||
| Length | 409 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKLFLRNAFK TLNPKRKLAT TILPSINLIL VKPFSQSTTI PKKQDRVRDH GYDNYMEVEK KIRKVVKFHS LILSQPNHTI AISLLDTLAR RLGLGFKQHE 101: PGAFLLKFPH VFEIYEHPVQ RILYCRLTRK ALDQIRHEHE AVLDQIPDAV TRLRKLVMMS NTGRIRLEHV RIARTEFGLP EDFEYSVILK HPQFFRLIDG 201: EETRDKYIEI VEKDPNLSIC AIERVREIEY RTKGIDAEDV RFSFVVNFPP GFKIGKYFRI AVWKWQRLPY WSPYEDISGY DLRSMEAQNR LEKRSVACIH 301: ELLSLTVEKK ITLERIAHFR NVMNLPKKLK EFLLQHQGIF YISTRGNYGK LHTVFLREGY KRGELVEPND VYLARRRLAE LVLMSPRKAK VDAELVRYRD 401: GLDDEDDVE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)