AT5G08230.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Tudor/PWWP/MBT domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Tudor/PWWP/MBT domain-containing protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), RNA polymerase II, large subunit, CTD (InterPro:IPR006569), PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT domain-containing protein (TAIR:AT5G23150.1); Has 47075 Blast hits to 25226 proteins in 1376 species: Archae - 78; Bacteria - 7272; Metazoa - 16776; Fungi - 5193; Plants - 9119; Viruses - 1951; Other Eukaryotes - 6686 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:2643846..2649788 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 156563.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.01 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.67 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1445 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAPGRKRGAN KAMAIGEMRL GDLVLAKVKG FPAWPAKIGQ PEDWNQAPDP KKHFVQFYGT GEIGFVTPPD IQPFTSETKK KLSARCQGKT VKYFSQAVEE 0101: ISAAFEESQK QKSDIVGNEA LLNAVEPSVT KPKYLNQASS DGKSDKFSSR ADPCLGKLVE NNGAEINPDV GEQDSSISNN RNTSPSSEPV EHGSPDPILK 0201: VAVDDKIDNV TCTDHSDGTG NNLVNDQRII RKTTDDSNKR CKDEVRAKRV PDSRAATDNH ILGPNQKLKG SIKGQDHGSK KGQDHGCRKE SSDSKVVTDL 0301: NIASSKKPKE LLKEKKKRFE NELGKSASGA DESKRAAKRP RSEDAKDQKQ CKSKRLVPVG EGKAEISDST GVVSIFKREI VLGISALGGK NQFDKDMVAY 0401: TKRRKQTVEH TSVSSFPGSL VKEGANHPEQ KISSSSDSDI KVQAAQLPKR RRAVCIYDDD DDDEDPKTPV HGGLSNIPIA STDAPKSANA SHNTSIKAKL 0501: LAGSTDSVKT GKVPLYKHNK DASLALPDSV EGYNSRMGKP FKALLQKNIK PILRSPKNSY QLVSFKKQVT GQNKTAKVAG AGMPDSVEGP SNSSYMGKPV 0601: IKLPPQNVKQ TLRSPKKSPQ LFSTKELVAV QNKIAKVSGA GIPKKYHGDS SKDVVAGSDR VSSSHSQTAN QRSKPAFGEK PTSTPKVATR LDVEVSRDTF 0701: VNLSADVIDV NQENGNAPLF SFGMSDSSSS CMKDLIAAAQ AKRKQAHSQF SPFVNLDHNS LNIDSMQTSK SPFMVQNVSS PAADATLIVA QEHQEVLTPS 0801: NHGRQSSSSN QAGTEENEER RFSSGHRSVG GSLSGATEAA ISRDTFEGMI ETLSRTKESI RRATRVAIDC AKYGIANEVV ELLIRKLEIE PHFPRKVDLF 0901: FLLDSIIQSS HSQKGRARSL YIPTVQAALP RLLGAAAPPG TGARENRHQC RKVLRLWLKR KIFPDFLLRR YIGDLGASGD DKTVGFSLRR PSRSERAVDD 1001: PLRDMEGMLV DEYGSNANFQ LPGYLASLTF GDDEEEDLPS TSQEVKNTHM EVKITHMEEP VLALGKLEAH DSSSDKPHCV VDVNGGLEME DASCQLKDDV 1101: CGIEAKEDSP ATTCATELPS FPAGSPPLPH ESPPSPPPQP PSSPPPPSSP PQLAPAPPPS DHCLPPPTAP LAPAQSIALP PSSITRPSMP SHPSLPLQPG 1201: FAPPAYPLLQ HEYQISMQRD HSSIATSNQI APVPVNAAHG RHADGGVKSE YLMPQSSSFA PVGMCSYGEP LPFISSKQLE YGNSDVLFKQ EASSQNQQLR 1301: PINTSFLQRP MIRNLAPAPS SHFPLPCRIV QSEPQRSSFP HPYHFPSQPV DGRQHMNEEW RMPPNGCSAD PQYGAWIGVR NPFPGSRTVT DGVFQPPPER 1401: PPSGTVRYQL AANNLQGGST ISGNIASQML LSRPDVPSAA QYRPS |
||||||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)