AT5G06350.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G27010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:1938781..1944197 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 99996.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.30 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||
| Length | 877 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVRSKAPAKK QQKKGIDFKK IKRKLGRKLP PPKNATNTEI KSKAIILPEQ SVAAEKSGLA TSKKGLTLKE LLPQTSHHNA KVRKDALYGI KDLFKNHPEE 101: LQSHKYAIIQ KLRERISDDD KLVRDVFYQL FDIDIFPLCK EDNQGLMVSL LMPYIFSAMA HSAIDVRLMA FKFFHLVVEF YPPTFSLDAE KILENYKDII 201: QKNHFYVEDK SKLKVALSGL SHCLSVLPCD ESDTKSQKKG PSQNETLLTY EQDATKDCVR YAHVYQRLKE VVAVLINCFQ DFIPLIHAPR GFDAHSFDCI 301: QHILRSIGYA IKFSIRRHKQ RQTAWRPASE EVTLMILDQD IASMLLKKLL GSFPLDPENN LYGKGDDKYF KLNSVLTEIF LEVSEWSHLP TDLSNRYLEF 401: IENTLLGKIT RSIRLRKDIH EKTLLALLPF LPKLILRVDR DWRDNLLEAF TITFSDCKPE SKLKLACIST VRDMIIPNGD ILYPNASDPT VHYYQVAWVN 501: KLPSLLNQLG NEHPVSTQVV LQLLLDLGRV GCLNASPTCE DDIRNFFSLC QGEGDVPGGP FASLPREAQE LALCFLYYFT TDKFSSPMMK AIVSCCLYPQ 601: LEPAVLYRIV EILHTAYRAG YIQITDHFSF LITLIARFKV VPEKLQSSIE CNERETYCGT FKEVTKLVCS CLSEMGDSSL VLQIVEKVLL EQIVLKPALD 701: NGCAILRMIC VLDSTPTTLS ERSVTTLSEF LPGYMINIVN CIPEDKENSY LYIQTCLYYL VPCYFLFNRS SKLTEQVLIR MRSMISENTK ALESVQDRES 801: GRNSLNMIQC IISVILLMHN DVKVRKIISS FKPEIDLILQ NVITLQSSRS TSLTVEGKHM MKIAGERLRI ASKSLLA |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)