AT1G72320.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.500 nucleus 0.500 ASURE: cytosol,nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : pumilio 23 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
pumilio 23 (PUM23); FUNCTIONS IN: RNA binding, binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); Has 376 Blast hits to 376 proteins in 171 species: Archae - 0; Bacteria - 0; Metazoa - 121; Fungi - 142; Plants - 69; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:27228984..27232580 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 84832.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.88 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.50 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 753 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVSVGSKSLP SRRHRTIEED SLMGERGKSS NNHSERNKGM RRKDHKGNRG FDVDSSKKNQ SGGAPNVKPA SKKHSEFEHQ NQFVRKEIDP ETSKYFSEIA 101: NLFDSNEVEL EERSVICGNA LEETRGREYE IATDYIISHV LQTLLEGCEL DQLCSFIRNS ASVFPAIAMD RSGSHVAESA LKSLATHLEN PDAYSVIEEA 201: LHSICKVIVD NPLDMMCNCY GSHVLRRLLC LCKGVSLDSP ELYGAKSSKA LAKRLNLKMS QLDDNNLEIP HQGFPGMLTY LLSGLLSCSR EDMKYLQVDQ 301: YSSLVLQTAL RLMLKQDEQL LEIIPLILRC NSTNKKVEGF HIETNVAKEI LESMKDNSFS HLVEVILEVA PESLYNEMFN KVFKNSLFEL SVDRCANFVI 401: QALISHARDQ EQMGIMWEEL APRFKDLLEQ GKSGVVASLI AVSQRLQSHE NKCCEALVGA VCSTNESRIS ILPRLLFLDY YFGCRDKSTW EWAPGAKMHV 501: MGCLILQGIF KFSSDHIQPY ITSLTSMKAE YITETAKDSS GARVIEAFLA SDAATKQKRR LIIKLRGHFG ELSLHTSGSF TVEKCFDACN LTLREAIASE 601: LLDVKVDLSK TKQGPYLLRK LDIDGYASRP DQWKSRQEAK QSTYNEFCSA FGSNKSNFPK NTFVSDASED AAQEIEVKNT RKEIDHHPTS GFKRHREKHA 701: KDKDEPFAGE KRSKQKKNKT SEATDKPKLA GSKRPFLSGE MTGKNRHSNK MRI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)