AT4G23640.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.895 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Potassium transporter family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Functions as a potassium transporter and is required for the establishment of root tip growth. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
TINY ROOT HAIR 1 (TRH1); FUNCTIONS IN: potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport, unidimensional cell growth, cell tip growth; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Potassium uptake protein, kup (InterPro:IPR018519), K+ potassium transporter (InterPro:IPR003855); BEST Arabidopsis thaliana protein match is: K+ uptake transporter 3 (TAIR:AT3G02050.1); Has 3556 Blast hits to 3482 proteins in 1085 species: Archae - 13; Bacteria - 2504; Metazoa - 1; Fungi - 97; Plants - 823; Viruses - 4; Other Eukaryotes - 114 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:-:12320476..12324291 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 86847.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.64 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.43 | ||||||||||||||||||||||||||||||||||||||||
| Length | 775 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MADRRNRCNQ ILLLAYQSFG LVFGDLSISP LYVYKCTFYG GLRHHQTEDT IFGAFSLIFW TITLLSLIKY MVFVLSADDN GEGGIFALYA LLCRHARFSL 101: LPNQQAADEE ISTYYGPGDA SRNLPSSAFK SLIERNKRSK TALLVLVLVG TSMVITIGVL TPAISVSSSI DGLVAKTSLK HSTVVMIACA LLVGLFVLQH 201: RGTNKVAFLF APIMILWLLI IATAGVYNIV TWNPSVYKAL SPYYIYVFFR DTGIDGWLSL GGILLCITGT EAIFAELGQF TATSIRFAFC CVVYPCLVLQ 301: YMGQAAFLSK NFSALPSSFY SSIPDPFFWP VLMMAMLAAM VASQAVIFAT FSIVKQCYAL GCFPRVKIVH KPRWVLGQIY IPEINWVVMI LTLAVTICFR 401: DTRHIAFAFG LACMTLAFVT TWLMPLIINF VWNRNIVFSV LFILFFGTIE LIFVASALVK IPKGGWITLL LSLFFTFITY VWHYGSRKKY LCDQHNKVPM 501: KSILSLGPSL GIIKVPGMGL IYTELASGVP ATFKHFLTNL PAFYQVVVFV CCKTVPIPYV PQKERYLIGR IGPKTYRMYR CIIRAGYKDV NKDGDDFEDE 601: LVMSIAEFIQ LESEGYGGSN TDRSIDGRLA VVKASNKFGT RLSRSISEAN IAGSSRSQTT VTNSKSPALL KLRAEYEQEL PRLSMRRMFQ FRPMDTKFRQ 701: PQVKEELFDL VNAKDAEVAY IVGHGHVKAK RNSVFVKQLV VNVAYSFLRK NCRSPGVMLN IPHICLIKVG MNYYL |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)