AT4G20940.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Leucine-rich receptor-like protein kinase family protein | ||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Leucine-rich receptor-like protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: signal transduction, N-terminal protein myristoylation; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich receptor-like protein kinase family protein (TAIR:AT5G10020.1); Has 124696 Blast hits to 48167 proteins in 1508 species: Archae - 53; Bacteria - 7002; Metazoa - 34401; Fungi - 1693; Plants - 72944; Viruses - 23; Other Eukaryotes - 8580 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:11202728..11206038 | ||||||||||||
| Molecular Weight (calculated) | 105117.00 Da | ||||||||||||
| IEP (calculated) | 5.67 | ||||||||||||
| GRAVY (calculated) | -0.09 | ||||||||||||
| Length | 977 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGQLPSQDIM ALLEFKKGIK HDPTGFVLNS WNDESIDFNG CPSSWNGIVC NGGNVAGVVL DNLGLTADAD FSLFSNLTKL VKLSMSNNSL SGVLPNDLGS 101: FKSLQFLDLS DNLFSSSLPK EIGRSVSLRN LSLSGNNFSG EIPESMGGLI SLQSLDMSSN SLSGPLPKSL TRLNDLLYLN LSSNGFTGKM PRGFELISSL 201: EVLDLHGNSI DGNLDGEFFL LTNASYVDIS GNRLVTTSGK LLPGVSESIK HLNLSHNQLE GSLTSGFQLF QNLKVLDLSY NMLSGELPGF NYVYDLEVLK 301: LSNNRFSGSL PNNLLKGDSL LLTTLDLSGN NLSGPVSSIM STTLHTLDLS SNSLTGELPL LTGGCVLLDL SNNQFEGNLT RWSKWENIEY LDLSQNHFTG 401: SFPDATPQLL RANHLNLSYN KLTGSLPERI PTHYPKLRVL DISSNSLEGP IPGALLSMPT LEEIHLQNNG MTGNIGPLPS SGSRIRLLDL SHNRFDGDLP 501: GVFGSLTNLQ VLNLAANNLS GSLPSSMNDI VSLSSLDVSQ NHFTGPLPSN LSSNIMAFNV SYNDLSGTVP ENLKNFPPPS FYPGNSKLVL PAGSPGSSAS 601: EASKNKSTNK LVKVVIIVSC AVALIILILV AILLFCICKS RRREERSITG KETNRRAQTI PSGSGGGMVV SAEDLVASRK GSSSEILSPD EKLAVATGFS 701: PSKTSNLSWS PGSGDSFPAD QQLARLDVRS PDRLVGELHF LDDSIKLTPE ELSRAPAEVL GRSSHGTSYR ATLDNGVFLT VKWLREGVAK QRKEFAKEVK 801: KFSNIRHPNV VTLRGAVPHG NLKATNILLD GAELNARVAD YCLHRLMTQA GTVEQILDAG ILGYRAPELA ASRKPLPSFK SDVYAFGVIL LEILTGRCAG 901: DVITGEQEGV DLTDWVRLRV AEGRGAECFD SVLTQEMGSD PVTEKGMKEV LGIALRCIRS VSERPGIKTI YEDLSSI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)