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AT3G51080.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : GATA transcription factor 6
Curator
Summary (TAIR10)
Encodes a member of the GATA factor family of zinc finger transcription factors.
Computational
Description (TAIR10)
GATA transcription factor 6 (GATA6); CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 5 (TAIR:AT5G66320.2); Has 1500 Blast hits to 1468 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 554; Plants - 766; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5641eggNOG:KOG1601EMBL:AL132980EMBL:AY064048
EMBL:AY117315EMBL:CP002686EnsemblPlants:AT3G51080EnsemblPlants:AT3G51080.1
entrez:824272Gene3D:3.30.50.10GeneID:824272GO:GO:0000977
GO:GO:0001085GO:GO:0001228GO:GO:0003682GO:GO:0003700
GO:GO:0005634GO:GO:0005667GO:GO:0006366GO:GO:0008270
GO:GO:0009416GO:GO:0030154GO:GO:0045944Gramene:AT3G51080.1
hmmpanther:PTHR10071hmmpanther:PTHR10071:SF163HOGENOM:HOG000238267InParanoid:Q9SD38
InterPro:IPR000679InterPro:IPR013088InterPro:IPR016679KEGG:ath:AT3G51080
OMA:RTAPHYSPaxDb:Q9SD38Pfam:PF00320Pfam:Q9SD38
Pfscan:PS50114PhylomeDB:Q9SD38PIR:T45739PIRSF:PIRSF016992
PRIDE:Q9SD38PRO:PR:Q9SD38PROSITE:PS00344PROSITE:PS50114
ProteinModelPortal:Q9SD38Proteomes:UP000006548RefSeq:NP_190677.1scanprosite:PS00344
SMART:SM00401SMR:Q9SD38STRING:3702.AT3G51080.1SUPFAM:SSF57716
TAIR:AT3G51080tair10-symbols:GATA6UniGene:At.27088UniProt:Q9SD38
Coordinates (TAIR10) chr3:+:18973639..18974668
Molecular Weight (calculated) 34680.20 Da
IEP (calculated) 7.56
GRAVY (calculated) -0.86
Length 312 amino acids
Sequence (TAIR10)
(BLAST)
001: MESVELTLKN SNMKDKTLTG GAQNGDDFSV DDLLDFSKEE EDDDVLVEDE AELKVQRKRG VSDENTLHRS NDFSTADFHT SGLSVPMDDI AELEWLSNFV
101: DDSSFTPYSA PTNKPVWLTG NRRHLVQPVK EETCFKSQHP AVKTRPKRAR TGVRVWSHGS QSLTDSSSSS TTSSSSSPRP SSPLWLASGQ FLDEPMTKTQ
201: KKKKVWKNAG QTQTQTQTQT RQCGHCGVQK TPQWRAGPLG AKTLCNACGV RYKSGRLLPE YRPACSPTFS SELHSNHHSK VIEMRRKKET SDGAEETGLN
301: QPVQTVQVVS SF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)