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AT4G22560.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12450.1); Has 380 Blast hits to 380 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 374; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JV2FeggNOG:ENOG41106AREMBL:AL033545EMBL:AL161557
EMBL:CP002687EnsemblPlants:AT4G22560EnsemblPlants:AT4G22560.1entrez:828352
GeneID:828352Gramene:AT4G22560.1hmmpanther:PTHR31681KEGG:ath:AT4G22560
OMA:MPNGWIKPhylomeDB:Q9SUW3PIR:T05450Proteomes:UP000006548
RefSeq:NP_193987.1SUPFAM:SSF56399TAIR:AT4G22560UniGene:At.32522
UniProt:Q9SUW3
Coordinates (TAIR10) chr4:+:11880178..11880972
Molecular Weight (calculated) 29183.60 Da
IEP (calculated) 8.56
GRAVY (calculated) -0.42
Length 264 amino acids
Sequence (TAIR10)
(BLAST)
001: MPNGWIKSLQ CKSKAFDDVY NFNSKSLMSS SSYNCSRKSS HCVKDVIDTR LSKKNQKPDP NLRRFKSCRT ETELLNPPNR TRRSKSARTS DALTELPDGH
101: PSRNVVEIIF HSSWSSDEFP GRIEMIFKVE HGSRTVTRFE EYREVVKSRA GFNGGTCEEE DARCLADGNE MMRFYPVLDG FNGGACVFAG GKGQAVCTFS
201: GSGEAYVSSG GGGGRKAMMI CRVIAGRVDD VIGFGSDSVA GRDGELFVFD TRAVLPCFLI IFRL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)