AT4G23530.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Protein of unknown function (DUF793) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
INVOLVED IN: biological_process unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF793) (TAIR:AT4G11300.1); Has 140 Blast hits to 137 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 140; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:+:12279171..12280361 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44166.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.35 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||
| Length | 396 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MARATEFQGS FLSRISIRRN QIVSMDVNHE QELEELEYFQ KHVAERFSDL ITSPSPPPSS SSSAVSQPSD PILSIPWLQN LLDVFMSCEA EFKAVLSTTQ 101: ISKSPSLERV LPEMLDRILK ALDLCNAVVN GIDSVRQSRR FAEIAVTALK QRPLCDGSVR RAKRALTSLL IGLNADERRD RNSGGSGCSN QRRTTSRSWS 201: FGTRSNVTGG GLYGQVVSKN WSASKQIQAM VANLVLPRGA EASGPAMPVY IMSSVMVLVM WVLVAAVPCQ TSSVLVAPLP LPKHQNWASA AMSIQERIGE 301: EIKRKEKRCG GGGLMEEMQR MEKIGLSLME FAERFRFPAD EEEEVEVAEK VDEMEEICRR MEVGLEDLQR QVRQVFHRLV RSRIEIVSLL EQAPAI |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)