AT3G08800.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.988 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); Has 149 Blast hits to 148 proteins in 72 species: Archae - 0; Bacteria - 6; Metazoa - 108; Fungi - 3; Plants - 22; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:2671148..2674910 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 104023.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.95 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.09 | ||||||||||||||||||||||||||||||||||||||||
| Length | 936 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTSSMEEDDS ISPESISLDT LASIRSLIIN ADTSDSVISS VFDFLTGLLS RGNSAILHHV LKLLSDLAFR RKELAPQIFD SILSNLLRLH NTVAEASHER 101: AAVESLAVLA SLSERTPSIA AALSKIDDEV FASICLGAPI SSRLWLLRNA DRFNVPSSVL FTLFLGFSKD PYPYIRKVAL DGLINICNAG DFNHTHAVEG 201: CYTRAVELLS DAEDSVRSSA VRAVSVWGKV MIASKEEEMN RRDCTDAVFL QLCSVVRDMS VDVRVEVFKA FGIIGTASES IILQTLSKKV LGAGKGKKPQ 301: NLLSNGSADV SSAAGVYIHG FEDEFYEVRE AAVDSFHSLS VNSIKFPDEA VYLLMDMLYD DYMVVRLKAL KALHHIADLG NLKIQETYMP AFLDAIVDTS 401: ENIRVEARNI LKLAKLPDLK LVNKCIDGVL KSLEMYPQDE PDILSALFHF GQNHTNFLVS MVKRFSEKLG TASGSKAEFN SRQLSASLTL IISAPLSNKQ 501: SITSIPPLAF SYSLAMLGKF SSGLHDMMDQ DMLLAYLTHC AILSSSSGTE FNKGDVFFHA YRDSNADLAG NPVLLPGKDI PAESKYMACK AELEIGNQAL 601: KFVNHILLKI KAAWLLSQSG CSKEALRALR ACKQELATLT ADSSISKGTL DFICQYVHVI ELLVQVWPHF NYSRHISTCS SVEVELLMEE VEIKLMEIRC 701: RFTGLSTEES LVLELVIFGC LLRLYKFEIC CRLSCMEKLS STISQLELHH EQQCTKPSDF LTETKKSLEE FGSSDDINSC RLLDLIKIFK CFSPEQFTFS 801: VNLQCVSAEV EVPGNGPYSP ISFVPGLPVA IPCEITLLNV PRDTCLWLRI SRNDETCQFV YLDPNLYNGN GREKRFMFTA VTYMTPRAVV FTLRVSIGIE 901: CLFEDICYRK QRHGPKHPVA YLCKEREIHL SLVSRT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)