AT2G36980.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT2G13600.1); Has 45451 Blast hits to 13631 proteins in 250 species: Archae - 6; Bacteria - 3; Metazoa - 113; Fungi - 146; Plants - 44602; Viruses - 0; Other Eukaryotes - 581 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:+:15531161..15533038 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 69100.90 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.59 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.02 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 625 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSVLVRLTSK IASLAKSGRI ASARQVFDGM PELDTVAWNT MLTSYSRLGL HQEAIALFTQ LRFSDAKPDD YSFTAILSTC ASLGNVKFGR KIQSLVIRSG 101: FCASLPVNNS LIDMYGKCSD TLSANKVFRD MCCDSRNEVT WCSLLFAYMN AEQFEAALDV FVEMPKRVAF AWNIMISGHA HCGKLESCLS LFKEMLESEF 201: KPDCYTFSSL MNACSADSSN VVYGRMVHAV MLKNGWSSAV EAKNSVLSFY TKLGSRDDAM RELESIEVLT QVSWNSIIDA CMKIGETEKA LEVFHLAPEK 301: NIVTWTTMIT GYGRNGDGEQ ALRFFVEMMK SGVDSDHFAY GAVLHACSGL ALLGHGKMIH GCLIHCGFQG YAYVGNALVN LYAKCGDIKE ADRAFGDIAN 401: KDLVSWNTML FAFGVHGLAD QALKLYDNMI ASGIKPDNVT FIGLLTTCSH SGLVEEGCMI FESMVKDYRI PLEVDHVTCM IDMFGRGGHL AEAKDLATTY 501: SSLVTDSSNN SSWETLLGAC STHWHTELGR EVSKVLKIAE PSEEMSFVLL SNLYCSTGRW KEGEDVRREM VERGMKKTPG CSWIEVGNQV STFVVGDSSH 601: PRLEELSETL NCLQHEMRNP ETFGP |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)