AT4G32430.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G27610.1); Has 44749 Blast hits to 13591 proteins in 248 species: Archae - 1; Bacteria - 28; Metazoa - 59; Fungi - 99; Plants - 43967; Viruses - 0; Other Eukaryotes - 595 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:15652982..15655273 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 85188.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.55 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.06 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 763 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTLLNYLHCN RSKSFLFQRF YSPYRIAHKL FDGSSQRNAT TSINHSISES LRRNSPARAL SIFKENLQLG YFGRHMDEVT LCLALKACRG DLKRGCQIHG 101: FSTTSGFTSF VCVSNAVMGM YRKAGRFDNA LCIFENLVDP DVVSWNTILS GFDDNQIALN FVVRMKSAGV VFDAFTYSTA LSFCVGSEGF LLGLQLQSTV 201: VKTGLESDLV VGNSFITMYS RSGSFRGARR VFDEMSFKDM ISWNSLLSGL SQEGTFGFEA VVIFRDMMRE GVELDHVSFT SVITTCCHET DLKLARQIHG 301: LCIKRGYESL LEVGNILMSR YSKCGVLEAV KSVFHQMSER NVVSWTTMIS SNKDDAVSIF LNMRFDGVYP NEVTFVGLIN AVKCNEQIKE GLKIHGLCIK 401: TGFVSEPSVG NSFITLYAKF EALEDAKKAF EDITFREIIS WNAMISGFAQ NGFSHEALKM FLSAAAETMP NEYTFGSVLN AIAFAEDISV KQGQRCHAHL 501: LKLGLNSCPV VSSALLDMYA KRGNIDESEK VFNEMSQKNQ FVWTSIISAY SSHGDFETVM NLFHKMIKEN VAPDLVTFLS VLTACNRKGM VDKGYEIFNM 601: MIEVYNLEPS HEHYSCMVDM LGRAGRLKEA EELMSEVPGG PGESMLQSML GSCRLHGNVK MGAKVAELAM EMKPELSGSY VQMYNIYAEK EEWDKAAEIR 701: KAMRKKNVSK EAGFSWIDVG DTEGSLTMQG FSSGDKSHPK SDEIYRMVEI IGLEMNLEGK VAV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)