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AT2G07675.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein S12/S23 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein S12/S23 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, small ribosomal subunit, intracellular; CONTAINS InterPro DOMAIN/s: Ribosomal protein S12/S23 (InterPro:IPR006032), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Ribosomal protein S12, bacterial-type (InterPro:IPR005679); BEST Arabidopsis thaliana protein match is: Ribosomal protein S12/S23 family protein (TAIR:ATMG00980.1); Has 9383 Blast hits to 9383 proteins in 3360 species: Archae - 13; Bacteria - 5674; Metazoa - 129; Fungi - 135; Plants - 1216; Viruses - 0; Other Eukaryotes - 2216 (source: NCBI BLink).
Protein Annotations
BioGrid:566539eggNOG:COG0048eggNOG:KOG1750EMBL:AC007143
EMBL:AC007730EMBL:CP002685EMBL:EF488948EMBL:EF488949
EMBL:JF729200EMBL:JF729201EMBL:JF729202EMBL:Y08501
EnsemblPlants:AT2G07675EnsemblPlants:AT2G07675.1EnsemblPlants:ATMG00980.1entrez:3890470
entrez:815348Gene3D:2.40.50.140GeneID:3890470GeneID:815348
Genevisible:P92532GO:GO:0003735GO:GO:0005739GO:GO:0006412
GO:GO:0015935Gramene:AT2G07675.1Gramene:ATMG00980.1HAMAP:MF_00403_B
hmmpanther:PTHR11652HOGENOM:HOG000040063InParanoid:P92532InterPro:IPR005679
InterPro:IPR006032InterPro:IPR012340iPTMnet:P92532KEGG:ath:ArthMp085
KEGG:ath:AT2G07675KO:K02950PANTHER:PTHR11652PaxDb:P92532
Pfam:P92532Pfam:PF00164PhylomeDB:P92532PIRSF:PIRSF002133
PRINTS:PR01034PRO:PR:P92532PROSITE:PS00055ProteinModelPortal:P92532
Proteomes:UP000006548RefSeq:NP_085552.2RefSeq:NP_178773.1scanprosite:PS00055
SMR:P92532STRING:3702.ATMG00980.1SUPFAM:SSF50249TAIR:ATMG00980
TIGRfam:TIGR00981TIGRFAMs:TIGR00981UniGene:At.52682UniProt:P92532
Coordinates (TAIR10) chr2:+:3270410..3270787
Molecular Weight (calculated) 14078.10 Da
IEP (calculated) 11.94
GRAVY (calculated) -1.07
Length 125 amino acids
Sequence (TAIR10)
(BLAST)
001: MPTFNQLIRH GREEKRRTDR TRALDKCPQK TGVCPRVSTR TPKKPNSAPR KIAKVRLSNR HDIFAHIPGE GHNSQEHSTV LIRGGRVKDS PGVKSHCIRG
101: VKDLMGIPGR RRGRSKYGAE KPKSI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)