AT1G80190.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.890 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : partner of SLD five 1 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Similar to the PSF1 component of GINS complex, which in other organism was shown to be involved in the initiation of DNA replication. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
partner of SLD five 1 (PSF1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: DNA-dependent DNA replication initiation; LOCATED IN: GINS complex, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GINS complex, subunit Psf1 (InterPro:IPR005339); Has 334 Blast hits to 334 proteins in 169 species: Archae - 0; Bacteria - 0; Metazoa - 122; Fungi - 142; Plants - 43; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:30159476..30161115 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 23321.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.96 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.52 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 201 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MYGRKGYQLI KDFATGEKGQ LKPFNSKLFD ETIEECDQNH HLIQSLIRKM QQEGLDVQNN RNADHYGALI HHLALIRNKR CLMAYVYNRA EIVRDLAWRV 101: GLELLDLPSE IQEKLTTLEK EYFKNHSVAL KSYMGKVGIE LNVDMVPPKD PYIKVRILDD IDEGIVLSDK TTNFARHSMH FLKRTDAEPY IARGQMEELT 201: G |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)