AT5G52910.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
|||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : timeless family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
homolog of Drosophila timeless | ||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
TIMELESS (ATIM); CONTAINS InterPro DOMAIN/s: Timeless C-terminal (InterPro:IPR007725), Timeless protein (InterPro:IPR006906); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:21457774..21463159 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 128910.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.95 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.57 | ||||||||||||||||||||||||||||
| Length | 1141 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDVEERISTK KKIDLEGLSV ICSDLGLPEE DEDRRRIGYS KSEYCLDNLK DLLRFLRRDD PESREVFKQV CAWNIVSKDL IPIIEHYQDE HNLVLNAVKV 0101: LVFLTMPIEP SSDDIPQQLE YLWGLKSAIT FSNIVAVIVS LLEAPLENLE LDVFNEEDWK LVQLVLTLFR NLLAIHDVSP IQKAGESTCY FLSLRDQFLE 0201: VLSRENVMDI VLVITQTIEG FNSLLRHDNL LLLEIYHYIL LGQDMELVAK APEKLDQGKQ ASVDSLKTLM KEEEVKRKLA RLNNMNQRHS QFGGTFTRVT 0301: MDGTKAVLKG IPSTTESTML KPQQGRGATE KIVWEHGPMS VTNDKSLCED IEKEHPSIQN SDIVTFFQVA QSITSFQFHK SSASSPAIET EETSELTTNQ 0401: KAGVNFSKSD ICAPIAATIN DRMFLLVISK WRCAFDGLKE TKDFKFLSAA SSLVKTMLCL LDLVIKLLPE DSKEAFTVRI LLYKLFYDQT DQGMCQFILN 0501: LVRSFDTHKQ PKSELGDLVE SIHIIVGLME NLQGRGTLRV SKKSRKARKK KPKGNKEATV HKLSENHPST SNEASTAKSI PMVDSTVSTE DGPMDVPPNK 0601: PEASNLETET DETQQMHSPK SNNVVDDLSS GSDDSSDGEE QTATDEVDFK VSTFISAFAS NSIIQNLCWL LKFYKSNPKQ TNHHVISILR RITEDLELAP 0701: MLYQLSLLIT FHKILDEQKV CPCKDYENIV TFLTDLVRNM LKKMKSQPLL FVEILFSKTR KECHYINAEY MLHELGHLRK QMGNQEKFSG TEEFGTSSDK 0801: GWAHRSLADA LGDDEADVVI SYDQGFQNED DDMVEDKSAG PSKRKRRLVL DGDMDIKIKD LYDRYKDDKN CSRLIAENLV PDGGISAAQV TNKLKQLGLE 0901: TRKRLRRGGT DHLDATSLAQ PSNTRKRVSS FSKEQETLIK ELYKKFKDEK RCCYLIASEL GSENTYTTAQ VSRKLKQLGL RLPRGKKSEA GMMLKDDHDD 1001: SSADESEDET LLAFKNRKSR KNQKNKQQTG SINEITPGGS EDNTERNETS LHEPTAGEEE DNDQSYITRE SRQSETDVHI SDNGPSTSLP EDPNLSSDNE 1101: LEDDELADWG DDSAAGGASL TQSPLSRRKL KMVLDKDDED D |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)