AT4G22470.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : protease inhibitor/seed storage/lipid transfer protein (LTP) family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, hypocotyl, sepal, stamen; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT4G22485.1); Has 219939 Blast hits to 80042 proteins in 2746 species: Archae - 655; Bacteria - 50351; Metazoa - 79801; Fungi - 26960; Plants - 28532; Viruses - 6737; Other Eukaryotes - 26903 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:11840316..11841443 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 38791.60 Da | ||||||||||||||||||||||||
| IEP (calculated) | 8.29 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.03 | ||||||||||||||||||||||||
| Length | 375 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASTTIILFL SFSIIPLLTI VRADNHSVYC PPPPPCICIC NPGPPPPQPD PQPPTPPTFQ PAPPANDQPP PPPQSTSPPP VATTPPALPP KPLPPPLSPP 101: QTTPPPPPAI TPPPPPAITP PLSPPPPAIT PPPPLATTPP ALPPKPLPPP LSPPQTTPPP PPAITPPLSP PLVGICSKND TELKICAGIL AISDGLLTTG 201: RAEPCCSIIR NVSDLDAVTC FCKSVGAPRF SLSPNFGIFF KVCGRRIPQG FSCPGPSPTI SPPPLPPQTL KPPPPQTTPP PPPAITPPLS PPLVGICSKN 301: DTELKICAGI LAISDGLLTT GRAEPCCSIV RNVSDLDAVT CFCKSVGARR FSLSPNFGIF FKVCGRRIPQ GFSCP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)