AT1G71890.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a sucrose transporter that is expressed in the endosperm. Mutants have delayed accumulation of fatty acids and embryo maturation. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SUC5; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, sucrose:hydrogen symporter activity; INVOLVED IN: seed development; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Sucrose/H+ symporter, plant (InterPro:IPR005989), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sucrose-proton symporter 1 (TAIR:AT1G71880.1); Has 2157 Blast hits to 2049 proteins in 534 species: Archae - 36; Bacteria - 796; Metazoa - 398; Fungi - 190; Plants - 419; Viruses - 0; Other Eukaryotes - 318 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:27058492..27060573 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54837.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.76 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.45 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 512 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGALEAERAA NNATALETQS SPEDLGQPSP LRKIISVASI AAGVQFGWAL QLSLLTPYIQ LLGIPHKWSS YMWLCGPISG MIVQPIVGYH SDRCESRFGR 101: RRPFIAAGVA LVAVSVFLIG FAADMGHSFG DKLENKVRTR AIIIFLTGFW FLDVANNTLQ GPCRAFLADL AAGDAKKTRV ANACFSFFMA VGNVLGYAAG 201: SYTNLHKMFP FTMTKACDIY CANLKTCFFL SITLLLIVTF SSLWYVKDKQ WSPPQGDKEE KTSSLFFFGE IFGAVRHMKR PMVMLLIVTV INWIAWFPFI 301: LYDTDWMGRE VYGGNSDGDE RSKKLYDQGV QAGALGLMFN SILLGFVSLG VESIGRKMGG AKRLWGCVNF ILAIGLAMTV LVTKSAEHHR EIAGPLAGPS 401: SGIKAGVFSL FTVLGIPLAI TYSIPFALAS IFSTNSGAGQ GLSLGVLNIA ICIPQMIVSF SSGPLDAQFG GGNLPSFVVG AIAAAVSGVL ALTVLPSPPP 501: DAPAMSGAMG FH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)