AT1G11070.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
BEST Arabidopsis thaliana protein match is: Hydroxyproline-rich glycoprotein family protein (TAIR:AT1G61080.1); Has 579 Blast hits to 567 proteins in 152 species: Archae - 0; Bacteria - 68; Metazoa - 159; Fungi - 113; Plants - 172; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:3690406..3693648 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 84815.50 Da | ||||||||||||||||||||||||
| IEP (calculated) | 10.23 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.58 | ||||||||||||||||||||||||
| Length | 763 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSVKTCKVEP LKGQTPLRSS KTKQDAKPYS CSSPPSIKAY TSPFVSQKTS RRVALSAEDI KNAHREATKI SSSSCGSSKW TGNFILMVEL RRKIINFRTI 101: IDLPPLTYYL SISNMVMRTM KDLHKLCPEI IDSSQILEMR REEVDKLLDN FYNALKSIGD SWIDDHEWII KSKYRSSNIR KNLSDRLVEK VLAALDGLIK 201: GMNERLNTTE NGNVEMKKKV SPRSTKTSND RSESLAKQPI RPKTVLSPPS KVHGDFSISV SNLPRNVRMQ ALVKLSPIDV KRLAIQNFSQ KEALSNNGDG 301: DDESLKVKKS ETEEKAKEAI LEKQDSVKSQ IDDKDCSKVS VKSEMVSKSF APPPPPPPGN AAIPVEPPLT MSAEKESYAP LPPPPGRAAL PPPPPLPMAV 401: RKGVAAPPLP PPGTAALPPP PPLPMAAGKG VAAPPPPPPG ARGGLGAKKV TSKLKRSTHL GALFRFLKGK LEGKNPEVRS RGAGGGSKGA TGSAPASGKQ 501: GMADALAEIT KKSPYFQKIE EDVRMYMTSI NELKTDITKF KNKDITELQK FHHRIESVLE KLEDETQVLA RCEGFPHKKL EAIRMAAALY SKLEGMIKEL 601: KNWKIESPAN QLYDKTERYF AKASHRNTDF RLFLRLSFFL IRKEIETLDQ IKAEEEKKFK SNNIHFDFNI LVQIKELMVD ISSGCMELAL KEKREAKIAS 701: QTTAESLEAK PSTKNKTPGW AKTLWRAFHF AYRVYTFAGG HDDRADKLTR ELAEEIEQIL GNQ |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)