AT1G56540.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.986 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) (TAIR:AT1G56510.1); Has 17561 Blast hits to 13901 proteins in 601 species: Archae - 16; Bacteria - 1092; Metazoa - 852; Fungi - 62; Plants - 15154; Viruses - 4; Other Eukaryotes - 381 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:21181664..21185306 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 125016.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.02 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1096 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASSSSSSSR RTWRYNVFTS FHGPDVRKTF LSHLRKQFNY NGITMFDDQR IERSQIIAPA LTEAIRESRI AIVLLSKNYA SSSWCLDELL EILDCKEQLG 0101: QIVMTVFYGV HPSDVRKQTG DFGIAFNETC ARKTEEQRQK WSQALTYVGN IAGEHFQNWD NEAKMIEKIA SDVSDKLNTT PSRDFDGMIG LEAHLRKIES 0201: LLDLDYDGAK IVGISGPAGI GKSTIARALH SVLSKRFQHN CFMDNLHESY KIGLVEYGLR LRLQEQLLSK ILNLDGIRIA HLGVIRERLH DQKVLIILDD 0301: VESLDQLDAL ANIEWFGPGS RVIVTTENKE ILQQHGISDI YHVGFPSSKE ALMIFCLSAF RQLSPPDRFM NLAAEVAKLC GYLPLALHVL GSSLRGKNYS 0401: DWIEELPRLQ TCLDGRIESV LKVGYESLHE KDQALFLYIA VFFNYQHADY VTSMLAKTNL NVRLGLKILA NRHLIHIGHG AKGIVVMHRL LKVMARQVIS 0501: KQEPWKRQIL VDTQEISYVL ENAEGNGSIA GISFDVGEIN KLTISAKAFE RMHNLLLLKV YDPWFTGKGQ VHIPEEMDFL PRLSLLRWDA YTRKTLPRRF 0601: CPENLVELNM PDSQLEKLWE GTQLLANLKT MKLSRSSRLK ELPNLSNAKN LERLDLHECV ALLELPSSIS NLHKLYFLET NHCRRLQVIP TLTNLVSLED 0701: IKMMGCLRLK SFPDIPANII RLSVMETTIA EFPASLRHFS HIESFDISGS VNLKTFSTLL PTSVTELHID NSGIESITDC IKGLHNLRVL ALSNCKKLTS 0801: LPKLPSSLKW LRASHCESLE RVSEPLNTPN ADLDFSNCFK LDRQARQAIF QQRFVDGRAL LPGRKVPALF DHRARGNSLT IPNSASYKVC VVISTEFDHK 0901: DRDSTIVSRL LCRCIVISNS VNSTDKEFVL TDVYKYRMEH LFIFHMVNPV SFFYPSSREI VLEFSSIHKH FDIVECGVQI LTDETERNNN VGSADEDDLW 1001: YIHEFSESLR KEEKDKDSVA KSESCGASEK EDEEATKDKD EDIAEHSDSE SISENRPRKR TMISATTNLK KWFLCLFLFF FFSFAFVKFS IYFDLF |
||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)