AT1G48360.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.403 nucleus 0.322 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : zinc ion binding;nucleic acid binding;hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides | ||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
zinc ion binding;nucleic acid binding;hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides; FUNCTIONS IN: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HIP116, Rad5p N-terminal (InterPro:IPR014905); Has 572 Blast hits to 551 proteins in 242 species: Archae - 0; Bacteria - 261; Metazoa - 71; Fungi - 95; Plants - 95; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:17868661..17872436 | ||||||||
| Molecular Weight (calculated) | 84975.50 Da | ||||||||
| IEP (calculated) | 5.68 | ||||||||
| GRAVY (calculated) | -0.32 | ||||||||
| Length | 746 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MLTGRESLLR LIGKRRRFLP NRHLLLSAHT PNSLNLEFND YGNLVSLAGD DCRLSEDPTS SDDPSKFSDD LSLSTRKKRR LTQTTLLQSS FLSVPKQLED 101: GLVICTQQKS ILDSETFEFS LVQRSEPSES ICCKVEDGSC SPSREESLKT VTLDEDNGEA IETFIVGRKF SDVQDLEIGG DIFLLRHPEN VKDRNAIKVI 201: SGDSEMLGYL PKDISQCLSP LIDDYDLKFE GTITSVPKKS SEAVLIKVVC HKMRSDGWKE CELYGDFKPL WEKVLQVVEH QMQFPPKTTR YQLNFNVLLQ 301: EVLRSCSHLF TADEKAFLES FPTLSEDSQR LFIRLYTRKG PWFRLSNISY PEVTDSLQAL KDLTVRGFMS SVKDANELDN QKMKEITELL NVTELRDILS 401: MNKVFSRTSR KRDLINSLCS CYNDGTRINL ATVILERTGL CAKVSSTAES LIWRVERLFF LNGEQDLSSF VLLDLGIIKY PTYKCIDSEQ IFSNRTKLLA 501: YEEAIEVAQL MDESLDNEDP QTVLKCIIIA ETRISSSSLD SAHAAAFNRF TAPWVNSKVV LLGVSFFENQ KRYNRAVYLL RRLLSCFNCD GRRGYWTVRL 601: STDLEHMGRP NESLTVAEQG LLDPWVRAGS RVALQRRILR LAKPPRRWKT PTFSNLVDNK IPEVTIQGRS LNCEVGIKNR FYGEDGEQCG VEQLALQYYS 701: GEGGGWQGIH TESSIWLTIF GLLMWDILFS DVPGVFQTRF QVNETQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)