AT1G31410.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : putrescine-binding periplasmic protein-related | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
putrescine-binding periplasmic protein-related; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial periplasmic spermidine/putrescine-binding protein (InterPro:IPR001188), Bacterial extracellular solute-binding, family 1 (InterPro:IPR006059); Has 4685 Blast hits to 4685 proteins in 1552 species: Archae - 5; Bacteria - 4396; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:11247094..11249345 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 58295.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.66 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||||||
| Length | 524 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATAAIISVK PPASFYCGGN RRDGGRGITI ARVSRDERFH ERIVGLSAST VLFIGLSSLR VCSPASARIL PPPIVVTENE INTETVAGEE NLNEVEDEEK 101: LEADFEAYKS KVYSLTVPLK LVALRGSVPP SWIKEFMSSQ GKRVRLKTQF RGNLEEIFFD LSKPSKNGKK GAASTAAADM ISIGDSWLSF AIKEKLIEPM 201: KGIEDQDWYK GLSDKWKIYL RRNYAGEKAP DGETWAVPYR WGTMVIAYKK SKFQNYKLAP IEDWADLWRP ELAGRIAMVN SPREVVGAVL KYMRASYNTT 301: DLDSQVPGGR LAVEKNLASL MKQIRLFDSN NYLKAFNVGD VWVTVGWSSD VIPVAKRMSN VTVIVPKSGA TLWADLWAIP AVSDSGKEAE QRGGRVRGPS 401: PLINQWIEFC LQPARSLPFT REVIPGASPS ALDGPLVTEP EKTKKDRTKL DTNLVTGVPP PEILSKCEFL EPLPEATLSE YRLLIETVRK QSQRPGLVEK 501: LKDIVSIKVR GFRAKLDSEM NKNI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)