AT1G60230.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.975 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Radical SAM superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Radical SAM superfamily protein; FUNCTIONS IN: iron-sulfur cluster binding, catalytic activity, RNA methyltransferase activity; INVOLVED IN: rRNA processing; LOCATED IN: cytoplasm; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Ribosomal RNA large subunit methyltransferase RlmN; (InterPro:IPR004383), Radical SAM (InterPro:IPR007197); BEST Arabidopsis thaliana protein match is: Radical SAM superfamily protein (TAIR:AT3G19630.1); Has 6934 Blast hits to 6928 proteins in 2336 species: Archae - 3; Bacteria - 5075; Metazoa - 1; Fungi - 1; Plants - 140; Viruses - 5; Other Eukaryotes - 1709 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:22212223..22214346 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50762.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.96 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.07 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 458 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSTTMRRLGI ITLTNSAAVV TPSLLSSTAA FPGTLTLPSP LLSDRLTNSI LFHESRSLSF SCFSSSSSSS AAYLPSLEEY PSAKGSVKRD DNQKVVLKGM 101: TYASLQEWVQ SHGFRPGQAL MLWKRLYKDN IWANNVDELE GLNKDLKRMI SEHAEFGALS FKDIRSASDG TRKILFTLDD GLVIETVVIP CDRGRTTVCV 201: SSQVGCAMNC QFCYTGRMGL KRNLTTAEIV EQAVYARRLL SHEVGSITNV VFMGMGEPFH NIDNVIKAAN IMVDENGLHF SPRKVTVSTS GLVPQLKRFL 301: RESNCALAVS LNATTDEVRN WIMPINRKYK LSLLLETLRE GLSSRHKYKV LFEYVMLAGV NDSMDDARRL VELVQGIPCK INLIQFNPHS GSQFIQTEED 401: KMIKFRNVLA EGGCTVLMRF SRGNDQMAAC GQLGMIGAVQ APVMRVPEQF RTALKASV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)