AT1G30010.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 ASURE: mitochondrion What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Intron maturase, type II family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Intron maturase, type II family protein; FUNCTIONS IN: RNA binding, RNA-directed DNA polymerase activity; INVOLVED IN: RNA-dependent DNA replication, RNA splicing; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Intron maturase, type II (InterPro:IPR000442), RNA-directed DNA polymerase (reverse transcriptase) (InterPro:IPR000477); BEST Arabidopsis thaliana protein match is: Intron maturase, type II family protein (TAIR:AT5G46920.1); Has 4269 Blast hits to 4093 proteins in 800 species: Archae - 33; Bacteria - 3762; Metazoa - 5; Fungi - 54; Plants - 249; Viruses - 3; Other Eukaryotes - 163 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:10513194..10515329 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 81541.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.77 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.49 | ||||||||||||||||||||||||||||||||||||
| Length | 711 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKRLTYPLSS LRNIVEHFHC NTFHKPISSL SISPTLKSES REPSSTQDPY SLLKQDPVDI CLSLWVKSFS SPPSATFSNL TGFLSKFDLW VLAYQRTCAH 101: VTGTFPPRNA IHANALRSLL SLQNAVTRSG GKFRWNDKMN QYVRSPKDKI SMNGGEGMSK GKVRRIIESE EPIFQDRVVH EVLLMILEPF FEARFSSKSH 201: GFRPGRNPHT VIRTIRSNFA GYLWFMKGDV SEMLDHVDVD VVMNCLQKVV KDRKVLGLIE SSLKFSDKRV LKRVVEKHGN DNGLGTKRRI EREKRNKTKK 301: KILSDDEPKP DPYWLRTFYS FAPKEAAKVP SYGYCGVLSP LLANVCLNEL DRFMETKIVE YFSPCKDDSI WKESIEDGCH NPAWPEFVPS SGKEKTRKMD 401: YIRYGGHFLI GIRGPREDAV KMRKEIIDFC DRVFGVRLDN SKLEIEHISR GIQFLDHIIC RRVIYPTLRY TGSGGSIVSK KGVGTLLSVS ASLEQCIRQF 501: RRLAFVKGDK DPEPLPCNPM LYSSQSHSNS QMNKFLETMA DWYKYADNRK KAVGFCAYVI RSSLAKLYAA RYRLKSRAKV YSIASRDLSH PLSESSNNSA 601: PEYSDLLRMG LVDAIEGVQF SRMSLIPSCD YTPFPRNWIP NHEQVLQEYI RLQDPKFFCG LHRSIKREGL TLPQDEISEA VWDFKTLGAW RSKYENKREA 701: DDGLQKLDSQ T |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)