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AT2G34430.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:23851315 (2013): plastid
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
  • PMID:12938931 (2003): plastid
  • PMID:12766230 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : light-harvesting chlorophyll-protein complex II subunit B1
Curator
Summary (TAIR10)
Photosystem II type I chlorophyll a/b-binding protein
Computational
Description (TAIR10)
light-harvesting chlorophyll-protein complex II subunit B1 (LHB1B1); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting in photosystem II, photosynthesis; LOCATED IN: in 8 components; EXPRESSED IN: shoot, cotyledon, guard cell, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: chlorophyll A/B binding protein 1 (TAIR:AT1G29930.1); Has 2425 Blast hits to 2344 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2094; Viruses - 0; Other Eukaryotes - 327 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IU0XeggNOG:ENOG410ZHBUEMBL:AC004077EMBL:AC004481EMBL:AF326864EMBL:AF339687EMBL:AY120776
EMBL:BT002103EMBL:CP002685EMBL:X64459EnsemblPlants:AT2G34430EnsemblPlants:AT2G34430.1entrez:818006Gene3D:1.10.3460.10
GeneID:818006GO:GO:0009416GO:GO:0009507GO:GO:0009522GO:GO:0009534GO:GO:0009535GO:GO:0009579
GO:GO:0009768GO:GO:0009941GO:GO:0010287GO:GO:0016020GO:GO:0016021GO:GO:0016168GO:GO:0018298
GO:GO:0031409GO:GO:0046872Gramene:AT2G34430.1hmmpanther:PTHR21649hmmpanther:PTHR21649:SF26HOGENOM:HOG000238032InterPro:IPR001344
InterPro:IPR022796InterPro:IPR023329KEGG:ath:AT2G34430KO:K08912OMA:MRKASKPPANTHER:PTHR21649Pfam:PF00504
PhylomeDB:Q39142PIR:S25677Proteomes:UP000006548RefSeq:NP_565787.1SMR:Q39142STRING:3702.AT2G34430.1SUPFAM:0043399
SUPFAM:SSF103511TAIR:AT2G34430tair10-symbols:LHB1B1tair10-symbols:LHCB1.4UniGene:At.10812UniGene:At.22980UniGene:At.24351
UniGene:At.66422UniGene:At.67299UniGene:At.71384UniGene:At.71449UniGene:At.71528UniGene:At.71696UniProt:Q39142
Coordinates (TAIR10) chr2:+:14524818..14525618
Molecular Weight (calculated) 28171.50 Da
IEP (calculated) 4.92
GRAVY (calculated) 0.00
Length 266 amino acids
Sequence (TAIR10)
(BLAST)
001: MAASTMALSS PALTGKAVKL SPAASEVFGT GRITMRKASK PTGPSGSPWY GSDRVKYLGP FSGEPPSYLT GEFPGDYGWD TAGLSADPET FARNRELEVI
101: HSRWAMLGAL GCVFPELLAR NGVKFGEAVW FKAGSQIFSD GGLDYLGNPS LVHAQSILAI WATQVILMGA VEGYRVAGDG PLGEAEDLLY PGGSFDPLGL
201: ATDPEAFAEL KVKELKNGRL AMFSMFGFFV QAIVTGKGPL ENLADHLADP VNNNAWAFAT NFVPGK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)