Search for Arabidopsis proteins where...
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Experimentally observed location inferred by to be in → Add Search for proteins that have (or have not) been assigned to a specific subcellular location by direct assay. GFP and MSMS describe assignments that were made by local curators based on in-house research or literature survey. TAIR, UniProt and AmiGO describe assignments made by external curators based on direct assay evidence.
Predicted location predicted by to be in → Add Search for proteins that have (or have not) been assigned to a specific subcellular location by a predictor program. Assignments are based on the protein set from TAIR7 and include the following predictors: iPSORT, WoLF PSORT, Mitopred, MitoProt2, SubLoc, PeroxP, Predotar, TargetP
Literature referenced location described in → Add One aspect of SUBA involved manual literature trawling for papers related to subcellular protein localization in Arabidopsis. Use this query component to extract calls by referenced paper. If you know of a paper that does not appear to be in the list, please inform Harvey Millar (hmillar(at)cyllene.uwa.edu.au) or Joshua Heazlewood (botjlh(at)cyllene.uwa.edu.au).
Protein description keyword → Add Search for/exclude proteins by keyword. A search will be conducted against the TAIR description of proteins in the SUBA database. The syntax of this search supports extended regular expressions (see this site for more information)
Physical properties: → Add Filter for proteins based on various numeric data, derived from TAIR7 or calculated locally.
Underlying gene model chromosome → Add Filter proteins so that only those that are translated from genes on (or not on) the specified chromosome are included
Arabidopsis Gene Identifier ↓ Add Enter a list of valid AGI's separated by new lines, spaces, commas, tabs or semi-colons. Alternative splice information may be included if desired. The search will attempt to filter results based on the list you have provided
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