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AT2G30790.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : photosystem II subunit P-2
Curator
Summary (TAIR10)
Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution.
Computational
Description (TAIR10)
photosystem II subunit P-2 (PSBP-2); FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); BEST Arabidopsis thaliana protein match is: photosystem II subunit P-1 (TAIR:AT1G06680.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
BioGrid:2979DNASU:817630EMBL:AC002340EMBL:AK175738EMBL:AK175821EMBL:AK175934EMBL:BT015608
EMBL:BT022094EMBL:CP002685EnsemblPlants:AT2G30790EnsemblPlants:AT2G30790.1entrez:817630Gene3D:3.40.1000.10GeneID:817630
Genevisible:O49344GO:GO:0005509GO:GO:0009654GO:GO:0015979GO:GO:0019898Gramene:AT2G30790.1hmmpanther:PTHR31407
hmmpanther:PTHR31407:SF6HOGENOM:HOG000242124InterPro:IPR002683InterPro:IPR016123KEGG:ath:AT2G30790KO:K02717OMA:ANSEDVN
PaxDb:O49344Pfam:O49344Pfam:PF01789PhylomeDB:O49344PIR:G84712PRIDE:O49344ProteinModelPortal:O49344
Proteomes:UP000006548RefSeq:NP_180637.3SMR:O49344STRING:3702.AT2G30790.1SUPFAM:SSF55724TAIR:AT2G30790tair10-symbols:PSBP-2
UniGene:At.50979UniProt:O49344
Coordinates (TAIR10) chr2:-:13119047..13119596
Molecular Weight (calculated) 13443.70 Da
IEP (calculated) 5.88
GRAVY (calculated) -0.37
Length 125 amino acids
Sequence (TAIR10)
(BLAST)
001: MITPTDKKSI TDYGSPEQFL SQVNYLLGKQ AYVGETASEG GFDANAVATA NILETSTQEI GGKEYYYLSV LTRTADGDEG GKHQLITATV NGGKLYICKA
101: QAGDKRWFKG ARKFVENAAT SFSVA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)