AT4G16960.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.669 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16940.1); Has 19980 Blast hits to 13439 proteins in 492 species: Archae - 4; Bacteria - 689; Metazoa - 980; Fungi - 44; Plants - 17549; Viruses - 10; Other Eukaryotes - 704 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:9546343..9551007 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 118215.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.55 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1041 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASSSSSPSS RRYDVFPSFS GVDVRKTFLS HLIEALDRRS INTFMDHGIV RSCIIADELI TAIREARISI VIFSENYASS TWCLNELVEI HKCHKDKDLD 0101: QMVIPVFYGV DPSHVRKQIG GFGDVFKKTC EDKPEDQKQR WVKALTDISN LAGEDLRNGP SEAAMVVKIA NDVSNKLFPL PKGFGDLVGI EDHIEAIKLK 0201: LCLESKEARI MVGIWGQSGI GKSTIGRALF SQLSSQFHHR AFITYKSTSG SDVSGMKLSW EKELLSEILG QKDIKIEHFG VVEQRLKHKK VLILLDDVDN 0301: LEFLRTLVGK AEWFGSGSRI IVITQDRQLL KAHEIDLIYE VKLPSQGLAL KMICQYAFGK YSPPDDFKEL AFEVAKLAGN LPLGLSVLGS SLKRRSKEEW 0401: MEMLAELQNG LNRDIMKTLR VSYVRLDPKD QDIFHYIAWL FNGWKVKSIK DFLGDGVNVN IRLKTLDDKS LIRLTPNDTI EMHNLLQKLA TEIDREESNG 0501: NPGKRRFLEN AEEILDVFTD NTVNENSFQG MLNLQYLKIH DHSWWQPRET RMRLPNGLVY LPRKLKWLWW DNCPLKRLPS NFKAEYLVEL RMVNSDLEKL 0601: WNGTQLLGSL KKMILRNSKY LKEIPDLSYA MNLERLDISD CEVLESFPSP LNSESLEYLD LLRCPKLRNF PETIMQISPY GIDIDVADCL WNKSLPGLDY 0701: LDCLRRCNPS KFLPEHLVNL KLRGNNMLEK LWEGVQSLGK LERMDLSECE NLIEIPDLSK ATNLVNLNLS NCKSLVTLPS TIGNHQKLYT LEMKECTGLK 0801: VLPMDVNLSS LHTVNLKGCS SLRFFPQISK SIAVLNLDDT AIEEVPCFEN FSRLIVLSMR GCKSLRRFPQ ISTSIQELNL ADTAIEQVPC FIENFSKLKI 0901: LNMSGCKKLK NISPNIFRLT WLKKVDFTDC GGVISALSDS TVVATMDDHY EKIEKMRCGV QLLHMTLGNS EEDFNLPCGQ TVTDTGLTAP NLELPLGRGE 1001: SSSISYPCLE GEAFSVDSMI TKRQAKEIPI AHRDEDSEAS W |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)