AT4G16920.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.820 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16950.2); Has 33072 Blast hits to 18315 proteins in 784 species: Archae - 24; Bacteria - 2125; Metazoa - 2462; Fungi - 169; Plants - 26873; Viruses - 34; Other Eukaryotes - 1385 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:9519173..9525691 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 147738.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.22 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1304 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAAASSSGSD IFPSFSGEDV RKNFLSHLLK QLNRRSINTF MDHVIERSCI IADALISAIR EARISIVIFS KNYAASTWCL NELVEIDNCS KYFGQKVIPV 0101: FYDVDPSHVR KQIGEFGKVF KKTCEDKPAD QKQRWVKALT DISNIAGEDL RNGPNDAHMV EKIANDVSNK LFHPPKGFGD LVGIEDHIEA IKSILCLESK 0201: EAKIMVGIWG QSGIGKSTIG RALFSQLSSQ FPLRAFVTYK STSGSDVSGM KLSWQKELLS EILGQKDIKI DHFGVVEQRL KHKKVLILLD DVDNLEFLKT 0301: LVGKAEWFGS GSRIIVITQD RQLLKAHEID LVYEVKLPSQ GLALQMISQY AFGKDSPPDD FKALAFEVAE LAGSLPLGLS VLGSSLKGRD KDEWVKMMPR 0401: LRNDSDDKIE ETLRVCYDRL NKKNRELFKC IACFFNGFKV SNVKELLEDD VGLTMLVEKS LIRITPDGDI EMHNLLEKLG REIDRAKSKG NPGKRQFLTN 0501: FEDIQEVLAE KTGTEILLGI RLPHPGYLTT RSFLIDEKLF KGMRNLQYLE IGYWSDGDLP QSLVYLPLKL RLLEWVYCPL KSLPSTFRAE YLVKLIMKNS 0601: KLEKLWEGTL PLGSLKKMNL WYSKYFKEIP DLSLAINLEE LNLSECESLV TLPSSIQNAI KLRTLYCSGV LLIDLKSLEG MCNLEYLSVD CSRMEGTQGI 0701: VYFPSKLRLL LWNNCPLKRL HSNFKVEYLV KLRMENSDLE KLWDGTQPLG RLKQMFLRGS KYLKEIPDLS LAINLEEVDI CKCESLVTFP SSMQNAIKLI 0801: YLDISDCKKL ESFPTDLNLE SLEYLNLTGC PNLRNFPAIK MGCSDVDFPE GRNEIVVEDC FWNKNLPAGL DYLDCLMRCM PCEFRPEYLV FLNVRCYKHE 0901: KLWEGIQSLG SLEEMDLSES ENLTEIPDLS KATNLKHLYL NNCKSLVTLP STIGNLQKLV RLEMKECTGL EVLPTDVNLS SLETLDLSGC SSLRTFPLIS 1001: KSIKWLYLEN TAIEEILDLS KATKLESLIL NNCKSLVTLP STIGNLQNLR RLYMKRCTGL EVLPTDVNLS SLGILDLSGC SSLRTFPLIS TNIVWLYLEN 1101: TAIGEVPCCI EDFTRLRVLL MYCCQRLKNI SPNIFRLRSL MFADFTDCRG VIKALSDATV VATMEDHVSC VPLSENIEYT CERFWDALYD DDYKNYFKFC 1201: CSNRIKECGV RLLYVYQETE YNQQTTRSEK RMGMTSGTSE EYINLPYGQI VADSGLAALN MELSLGQGEA SSSTSLEGEA LCVDYMITEE QDEEIPILST 1301: DSGN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)