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AT3G49170.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (plastidal marker)

At3g49170-GFP (AA 1-100)plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 2261 (EMB2261); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 48732 Blast hits to 14187 proteins in 273 species: Archae - 0; Bacteria - 16; Metazoa - 205; Fungi - 147; Plants - 47588; Viruses - 0; Other Eukaryotes - 776 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AL132956EMBL:AY864347EMBL:AY864348EMBL:CP002686EnsemblPlants:AT3G49170
EnsemblPlants:AT3G49170.1entrez:824078Gene3D:1.25.40.10GeneID:824078GO:GO:0008270GO:GO:0009507GO:GO:0009793
Gramene:AT3G49170.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF154HOGENOM:HOG000237570InParanoid:Q5G1T1InterPro:IPR002885InterPro:IPR011990
InterPro:IPR032867iPTMnet:Q5G1T1KEGG:ath:AT3G49170ncoils:CoilOMA:DMYAKSHPaxDb:Q5G1T1Pfam:PF01535
Pfam:PF13041Pfam:PF14432Pfam:Q5G1T1Pfscan:PS51375PhylomeDB:Q5G1T1PIR:T45822PRIDE:Q5G1T1
PRO:PR:Q5G1T1PROSITE:PS51375ProteinModelPortal:Q5G1T1Proteomes:UP000006548RefSeq:NP_190486.2SMR:Q5G1T1STRING:3702.AT3G49170.1
SUPFAM:SSF48452TAIR:AT3G49170tair10-symbols:EMB2261TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.35640UniProt:Q5G1T1
Coordinates (TAIR10) chr3:-:18226954..18229600
Molecular Weight (calculated) 95500.80 Da
IEP (calculated) 6.80
GRAVY (calculated) -0.10
Length 850 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMISFSFPS PAKLPIKSQP SVSNRINVAD RLILRHLNAG DLRGAVSALD LMARDGIRPM DSVTFSSLLK SCIRARDFRL GKLVHARLIE FDIEPDSVLY
101: NSLISLYSKS GDSAKAEDVF ETMRRFGKRD VVSWSAMMAC YGNNGRELDA IKVFVEFLEL GLVPNDYCYT AVIRACSNSD FVGVGRVTLG FLMKTGHFES
201: DVCVGCSLID MFVKGENSFE NAYKVFDKMS ELNVVTWTLM ITRCMQMGFP REAIRFFLDM VLSGFESDKF TLSSVFSACA ELENLSLGKQ LHSWAIRSGL
301: VDDVECSLVD MYAKCSADGS VDDCRKVFDR MEDHSVMSWT ALITGYMKNC NLATEAINLF SEMITQGHVE PNHFTFSSAF KACGNLSDPR VGKQVLGQAF
401: KRGLASNSSV ANSVISMFVK SDRMEDAQRA FESLSEKNLV SYNTFLDGTC RNLNFEQAFK LLSEITEREL GVSAFTFASL LSGVANVGSI RKGEQIHSQV
501: VKLGLSCNQP VCNALISMYS KCGSIDTASR VFNFMENRNV ISWTSMITGF AKHGFAIRVL ETFNQMIEEG VKPNEVTYVA ILSACSHVGL VSEGWRHFNS
601: MYEDHKIKPK MEHYACMVDL LCRAGLLTDA FEFINTMPFQ ADVLVWRTFL GACRVHSNTE LGKLAARKIL ELDPNEPAAY IQLSNIYACA GKWEESTEMR
701: RKMKERNLVK EGGCSWIEVG DKIHKFYVGD TAHPNAHQIY DELDRLITEI KRCGYVPDTD LVLHKLEEEN DEAEKERLLY QHSEKIAVAF GLISTSKSRP
801: VRVFKNLRVC GDCHNAMKYI STVSGREIVL RDLNRFHHFK DGKCSCNDYW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)