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AT2G18020.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22215637 (2012): plasma membrane
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:20061580 (2010): plastid
  • PMID:19334764 (2009): plasma membrane
  • PMID:17934214 (2008): cytosol
  • PMID:17317660 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15821981 (2005): cytosol cytosolic ribosomes
  • PMID:15734919 (2005): cytosol cytosolic ribosomes
  • PMID:15496452 (2005): nucleus
  • PMID:15215502 (2004): plant-type vacuole
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L2 family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 2296 (EMB2296); FUNCTIONS IN: structural constituent of ribosome, protein binding; INVOLVED IN: translation, embryo development ending in seed dormancy; LOCATED IN: in 7 components; EXPRESSED IN: male gametophyte, guard cell, cultured cell; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein L2 (InterPro:IPR002171), Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Ribosomal protein L2, C-terminal (InterPro:IPR022669), Ribosomal protein L2, domain 3 (InterPro:IPR014726), Ribosomal Proteins L2, RNA binding domain (InterPro:IPR022666), Ribosomal protein L2, conserved site (InterPro:IPR022671); BEST Arabidopsis thaliana protein match is: Ribosomal protein L2 family (TAIR:AT4G36130.1); Has 10660 Blast hits to 10653 proteins in 3642 species: Archae - 317; Bacteria - 5675; Metazoa - 457; Fungi - 292; Plants - 1219; Viruses - 0; Other Eukaryotes - 2700 (source: NCBI BLink).
Protein Annotations
BioGrid:1671eggNOG:COG0090eggNOG:KOG2309EMBL:AC006201EMBL:AY128314EMBL:BT001177EMBL:CP002685
EMBL:X86765EnsemblPlants:AT2G18020EnsemblPlants:AT2G18020.1entrez:816314Gene3D:2.30.30.30Gene3D:2.40.50.140Gene3D:4.10.950.10
GeneID:816314Genevisible:P46286GO:GO:0002181GO:GO:0003723GO:GO:0003735GO:GO:0005730GO:GO:0005773
GO:GO:0005774GO:GO:0005829GO:GO:0005886GO:GO:0009507GO:GO:0022625GO:GO:0022626Gramene:AT2G18020.1
HAMAP:MF_01320_Ahmmpanther:PTHR13691hmmpanther:PTHR13691:SF16HOGENOM:HOG000232983InParanoid:P46286IntAct:P46286InterPro:IPR002171
InterPro:IPR008991InterPro:IPR012340InterPro:IPR014722InterPro:IPR014726InterPro:IPR022666InterPro:IPR022669InterPro:IPR022671
InterPro:IPR023672iPTMnet:P46286KEGG:ath:AT2G18020KO:K02938OMA:HFRDPYKPANTHER:PTHR13691PaxDb:P46286
Pfam:P46286Pfam:PF00181Pfam:PF03947PhylomeDB:P46286PIR:C84559PIRSF:PIRSF002158PRIDE:P46286
PRO:PR:P46286PROSITE:PS00467ProteinModelPortal:P46286Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-1799339Reactome:R-ATH-72689
Reactome:R-ATH-72706Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_179393.1scanprosite:PS00467SMART:SM01382SMART:SM01383
SMR:P46286STRING:3702.AT2G18020.1SUPFAM:SSF50104SUPFAM:SSF50249TAIR:AT2G18020tair10-symbols:EMB2296UniGene:At.24098
UniGene:At.74928UniProt:P46286
Coordinates (TAIR10) chr2:+:7837151..7838160
Molecular Weight (calculated) 27860.80 Da
IEP (calculated) 11.52
GRAVY (calculated) -0.47
Length 258 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRVIRAQRK GAGSVFKSHT HHRKGPAKFR SLDFGERNGY LKGVVTEIIH DPGRGAPLAR VTFRHPFRFK KQKELFVAAE GMYTGQFLYC GKKATLVVGN
101: VLPLRSIPEG AVVCNVEHHV GDRGVLARAS GDYAIVIAHN PDSDTTRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNSWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGQKVGLIAA RRTGRLRGQA AASAAKAD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)