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AT5G62430.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : cycling DOF factor 1
Curator
Summary (TAIR10)
Dof-type zinc finger domain-containing protein, similar to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Represses expression of Constans (CO), a circadian regulator of flowering time. Interacts with LKP2 and FKF1. Expression oscillates under constant light conditions. Mainly expressed in the vasculature of cotyledons, leaves and hypocotyls, but also in stomata. Localized to the nucleus and acts as a repressor of CONSTANS through binding to the Dof binding sites in the CO promoter. Protein gets degraded by FKF1 in the afternoon.
Computational
Description (TAIR10)
cycling DOF factor 1 (CDF1); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: cycling DOF factor 3 (TAIR:AT3G47500.1); Has 1130 Blast hits to 1085 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1125; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
BioGrid:21608eggNOG:ENOG410JC2QeggNOG:ENOG410ZK6NEMBL:AB015469EMBL:AB231333EMBL:AF446362EMBL:AY143830
EMBL:CP002688EnsemblPlants:AT5G62430EnsemblPlants:AT5G62430.1entrez:836364GeneID:836364Genevisible:Q8W1E3GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0009658GO:GO:0009908GO:GO:0045892
GO:GO:0046872GO:GO:0048510hmmpanther:PTHR31089hmmpanther:PTHR31089:SF4HOGENOM:HOG000239772IntAct:Q8W1E3InterPro:IPR003851
KEGG:ath:AT5G62430KO:K16222OMA:QHATISEPaxDb:Q8W1E3Pfam:PF02701Pfam:Q8W1E3Pfscan:PS50884
PhylomeDB:Q8W1E3PRIDE:Q8W1E3PRO:PR:Q8W1E3ProDom:PD007478PROSITE:PS01361PROSITE:PS50884Proteomes:UP000006548
RefSeq:NP_201049.3scanprosite:PS01361STRING:3702.AT5G62430.1TAIR:AT5G62430tair10-symbols:CDF1UniGene:At.9300UniProt:Q8W1E3
Coordinates (TAIR10) chr5:-:25069298..25070787
Molecular Weight (calculated) 33640.60 Da
IEP (calculated) 9.16
GRAVY (calculated) -0.80
Length 298 amino acids
Sequence (TAIR10)
(BLAST)
001: MLETKDPAIK LFGMKIPFPT VLEVADEEEE KNQNKTLTDQ SEKDKTLKKP TKILPCPRCN SMETKFCYYN NYNVNQPRHF CKACQRYWTS GGTMRSVPIG
101: AGRRKNKNNS PTSHYHHVTI SETNGPVLSF SLGDDQKVSS NRFGNQKLVA RIENNDERSN NNTSNGLNCF PGVSWPYTWN PAFYPVYPYW SMPVLSSPVS
201: SSPTSTLGKH SRDEDETVKQ KQRNGSVLVP KTLRIDDPNE AAKSSIWTTL GIKNEVMFNG FGSKKEVKLS NKEETETSLV LCANPAALSR SINFHEQM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)