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AT5G18037.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 88 (TAIR:AT5G18300.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
EMBL:CP002688EnsemblPlants:AT5G18037EnsemblPlants:AT5G18037.1entrez:6241326
GeneID:6241326GO:GO:0003677GO:GO:0005634GO:GO:0006351
GO:GO:0006355Gramene:AT5G18037.1hmmpanther:PTHR31719hmmpanther:PTHR31719:SF12
InterPro:IPR003441KEGG:ath:AT5G18037PaxDb:B3H7D8Pfam:PF02365
Pfscan:PS51005PhylomeDB:B3H7D8PRIDE:B3H7D8PROSITE:PS51005
ProteinModelPortal:B3H7D8Proteomes:UP000006548RefSeq:NP_001119244.1SMR:B3H7D8
SUPFAM:SSF101941TAIR:AT5G18037UniGene:At.73225UniProt:B3H7D8
Coordinates (TAIR10) chr5:-:5971313..5971528
Molecular Weight (calculated) 8758.30 Da
IEP (calculated) 5.63
GRAVY (calculated) -0.85
Length 71 amino acids
Sequence (TAIR10)
(BLAST)
1: MSMVKYYDKE EHVGFWFHPS AQELIIRYIG PKVTKRSNKE FELEDKFDIY AKEPWRLSHT ETNFLEPNEW F
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)