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AT5G60120.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : target of early activation tagged (EAT) 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
target of early activation tagged (EAT) 2 (TOE2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2.7 (TAIR:AT2G28550.1); Has 5042 Blast hits to 4634 proteins in 238 species: Archae - 0; Bacteria - 21; Metazoa - 0; Fungi - 0; Plants - 4961; Viruses - 7; Other Eukaryotes - 53 (source: NCBI BLink).
Protein Annotations
BioGrid:21378eggNOG:ENOG410JXDUeggNOG:ENOG4110426EMBL:AB019231EMBL:BT001916EMBL:CP002688EnsemblPlants:AT5G60120
EnsemblPlants:AT5G60120.1entrez:836134ExpressionAtlas:Q9LVG2Gene3D:3.30.730.10GeneID:836134Genevisible:Q9LVG2GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0007275GO:GO:0009873hmmpanther:PTHR32467hmmpanther:PTHR32467:SF15
HOGENOM:HOG000293136InParanoid:Q9LVG2IntAct:Q9LVG2InterPro:IPR001471InterPro:IPR016177InterPro:IPR031112PANTHER:PTHR32467
PaxDb:Q9LVG2Pfam:PF00847Pfam:Q9LVG2Pfscan:PS51032PhylomeDB:Q9LVG2PRIDE:Q9LVG2PRO:PR:Q9LVG2
PROSITE:PS51032ProteinModelPortal:Q9LVG2Proteomes:UP000006548RefSeq:NP_200820.3SMART:SM00380SMR:Q9LVG2STRING:3702.AT5G60120.2
SUPFAM:SSF54171TAIR:AT5G60120tair10-symbols:TOE2UniGene:At.29184UniProt:Q9LVG2
Coordinates (TAIR10) chr5:+:24208153..24211067
Molecular Weight (calculated) 53167.20 Da
IEP (calculated) 7.26
GRAVY (calculated) -0.63
Length 485 amino acids
Sequence (TAIR10)
(BLAST)
001: MLDLNLDVDS TESTQNERDS ITVKGVSLNQ MDESVTSNSS VVNAEASSCI DGEDELCSTR TVKFQFEILK GGGEEEEEDD DERSAVMMTK EFFPVAKGMN
101: FMDSSAQSSR STVDISFQRG KQGGDFIGSG SGGGDASRVM QPPSQPVKKS RRGPRSKSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD TAHAAARAYD
201: RAAVKFRGLE ADINFVIGDY EEDLKQMANL SKEEVVQVLR RQSSGFSRNN SRYQGVALQK IGGWGAQMEQ LHGNMGCDKA AVQWKGREAA SLIEPHASRM
301: IPEAANVKLD LNLGISLSLG DGPKQKDRAL RLHHVPNNSV CGRNTMMENH MAAAACDTPF NFLKRGSDHL NNRHALPSAF FSPMERTPEK GLMLRSHQSF
401: PARTWQGHDQ SSGGTAVAAT APPLFSNAAS SGFSLSATRP PSSTAIHHPS QPFVNLNQPG LYVIHPSDYI SQHQHNLMNR PQPPP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)