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AT1G53170.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ethylene response factor 8
Curator
Summary (TAIR10)
encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-8). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.
Computational
Description (TAIR10)
ethylene response factor 8 (ERF8); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene responsive element binding factor 4 (TAIR:AT3G15210.1); Has 5970 Blast hits to 5718 proteins in 254 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 5959; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Protein Annotations
BioGrid:26976eggNOG:ENOG410J0HHeggNOG:ENOG410YQ8JEMBL:AB036884
EMBL:AC008007EMBL:AK117541EMBL:BT005401EMBL:CP002684
EnsemblPlants:AT1G53170EnsemblPlants:AT1G53170.1entrez:841751Gene3D:3.30.730.10
GeneID:841751Genevisible:Q9MAI5GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0009873Gramene:AT1G53170.1
hmmpanther:PTHR31677HOGENOM:HOG000237624InParanoid:Q9MAI5IntAct:Q9MAI5
InterPro:IPR001471InterPro:IPR016177KEGG:ath:AT1G53170OMA:HESNAAK
PaxDb:Q9MAI5Pfam:PF00847Pfam:Q9MAI5Pfscan:PS51032
PhylomeDB:Q9MAI5PIR:D96572PRIDE:Q9MAI5PRINTS:PR00367
PRO:PR:Q9MAI5PROSITE:PS51032ProteinModelPortal:Q9MAI5Proteomes:UP000006548
RefSeq:NP_175725.1SMART:SM00380SMR:Q9MAI5STRING:3702.AT1G53170.1
SUPFAM:SSF54171TAIR:AT1G53170tair10-symbols:ATERF-8tair10-symbols:ATERF8
tair10-symbols:ERF8UniGene:At.4604UniProt:Q9MAI5
Coordinates (TAIR10) chr1:-:19821539..19822096
Molecular Weight (calculated) 20025.80 Da
IEP (calculated) 9.78
GRAVY (calculated) -0.43
Length 185 amino acids
Sequence (TAIR10)
(BLAST)
001: MPNITMGLKP DPVAPTNPTH HESNAAKEIR YRGVRKRPWG RYAAEIRDPV KKTRVWLGTF DTAQQAARAY DAAARDFRGV KAKTNFGVIV GSSPTQSSTV
101: VDSPTAARFI TPPHLELSLG GGGACRRKIP LVHPVYYYNM ATYPKMTTCG VQSESETSSV VDFEGGAGKI SPPLDLDLNL APPAE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)