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AT5G56590.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.969
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : plasma membrane 14517339
AmiGO : plasma membrane 17644812
SwissProt : extracellular 16381842
SwissProt : plasma membrane 16381842
TAIR : plasma membrane 14517339
TAIR : plasma membrane 17644812
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:14517339 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : O-Glycosyl hydrolases family 17 protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT4G29360.1); Has 2891 Blast hits to 2808 proteins in 162 species: Archae - 0; Bacteria - 8; Metazoa - 4; Fungi - 51; Plants - 2805; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G56590-MONOMERCAZy:CBM43CAZy:GH17EC:3.2.1.39eggNOG:ENOG410IIXFeggNOG:ENOG410YA1SEMBL:AB013392
EMBL:AY075591EMBL:AY133637EMBL:CP002688EnsemblPlants:AT5G56590EnsemblPlants:AT5G56590.1entrez:835760Gene3D:3.20.20.80
GeneID:835760Genevisible:Q9FJU9GO:GO:0005576GO:GO:0005886GO:GO:0005975GO:GO:0006952GO:GO:0009505
GO:GO:0031225GO:GO:0042973GO:GO:0046658GO:GO:0071555Gramene:AT5G56590.1hmmpanther:PTHR32227hmmpanther:PTHR32227:SF88
HOGENOM:HOG000238220InParanoid:Q9FJU9InterPro:IPR000490InterPro:IPR012946InterPro:IPR013781InterPro:IPR017853KEGG:ath:AT5G56590
ncoils:CoilOMA:HNIKYVRPaxDb:Q9FJU9Pfam:PF00332Pfam:PF07983Pfam:Q9FJU9PhylomeDB:Q9FJU9
PRIDE:Q9FJU9PRO:PR:Q9FJU9PROSITE:PS00587ProteinModelPortal:Q9FJU9Proteomes:UP000006548RefSeq:NP_200470.1scanprosite:PS00587
SMART:SM00768SMR:Q9FJU9SUPFAM:SSF51445TAIR:AT5G56590UniGene:At.43021UniProt:Q9FJU9
Coordinates (TAIR10) chr5:+:22907521..22909436
Molecular Weight (calculated) 55606.80 Da
IEP (calculated) 7.86
GRAVY (calculated) -0.16
Length 506 amino acids
Sequence (TAIR10)
(BLAST)
001: MARDFKLIFS ISILLLLLDC CYGGKVGVCY GRSADDLPTP SKVVQLIQQH NIKYVRIYDY NSQVLKAFGN TSIELMIGVP NSDLNAFSQS QSNVDTWLKN
101: SVLPYYPTTK ITYITVGAES TDDPHINASS FVVPAMQNVL TALRKVGLSR RIKVSTTLSL GILSRSFPPS AGAFNSSYAY FLRPMLEFLA ENKSPFMIDL
201: YPYYAYRDSP NNVSLDYVLF ESSSEVIDPN TGLLYKNMFD AQVDALYYAL TALNFRTIKI MVTETGWPTK GSPKEKAAAS SDNAETYNSN IIRHVVTNQG
301: TPAKPGEAMN VYIFSLFNEN RKAGLDSERN WGLFYPDQTS VYQLDFTGKS NGFHSNSSGT NSSGSSNSWC IASSKASERD LKGALDWACG PGNVDCTAIQ
401: PSQPCFQPDT LVSHASFVFN SYFQQNRATD VACSFGGAGV KVNKDPSYDK CIYITAGGNK TKATNATALT SSASTPRGNE LLQWILKLCL MISLFFSLQT
501: MNSQAL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)