AT3G13000.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function, DUF547 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function, DUF547; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT1G16750.1); Has 738 Blast hits to 726 proteins in 118 species: Archae - 2; Bacteria - 127; Metazoa - 26; Fungi - 3; Plants - 527; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:4158214..4160818 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62631.60 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.68 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||
| Length | 553 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSEGRETCEE STSGESFPYR FQLEEDVKRL QLQLQQEIDL HTFLESVMEK DPWELSYSSS VPHPAQELLS NIVTLETAVT KLEQEMMSLN FQLSQERNER 101: RLAEYQLTHS ASPLNSSSSL RYLNQSDSEL HQSAEDSPSQ DQIVHYQESS SESSPAESTV EQTLDPSNDF LEKRLMRKTN ARKLPRGMPP KYLWDQPNLL 201: SEEMVRCMKN IFMSLADPTA TSKASSNESH LSPVSPRGHL SSSASWWPST ERSMISSWVQ SPQIDIQNNA NVLATGDVFD PYRVRGKLSW AEIGNYSLAS 301: EVSWMSVGKK QLEYASGALK KFRTLVEQLA RVNPIHLSCN EKLAFWINLY NALIMHAYLA YGVPKSDLKL FSLMQKAAYT VGGHSYTAAT MEYVILKMKP 401: PMHRPQIALL LAIHKMKVSE EQRRASIDTH EPLLGFALSC GMYSSPAVRI YSAKGVKEEM LEAQRDFIQA SVGLSSKGKL LLPKMLHCYA KSLVEDSNLG 501: VWISRYLPPH QAAFVEQCIS QRRQSLLASR NCGILPFDSR FRYLFLPDDN TSL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)