AT5G56220.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.997 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: apoptosis; LOCATED IN: chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS class) (TAIR:AT4G23440.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:22754871..22757792 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 108405.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.68 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||||||||||
| Length | 973 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKGIEEEASL VGLTIRTSSP ASSSSKKGKE DLLQANNNAS DSSPSIKNSP FYSPSLVSPP SSAFVSALQS PYISPRATTP SITTHKPSPP LSYKGSQSDD 101: VPSSSYTPPS DQYEFSDEQP SDRKLKLSAS CTPDPAPPRI SFSFPVPRVS LAKVSVSSPA TNTKLRSSDV FIGFHGQNPN LVRFCKWLKS ELELQGIACF 201: VADRAKYSDT QSHEIADRVI CSVTYGIVVV SCSSLLNYLS LEEVRFFAQK KNLIPIFYGT GPSEIMGLLN CNAIDKECKE AIDGLIKSHE FKLEANESNW 301: RSCVGKTATI LRAKLGRKSV ADKEIVEGID ELPFPRNRSF LGREKEIIEM EMALFGNGEY LESTTPSTRG EASGQSEGLA DEESDVVPTR NGKFISLELG 401: RCSDSRSEAW SDPNGGKNSL KRLLKTKKCR NNSNCKSSTS VVCVNGVPGI GKTELALEFA YRYSQRYKMV LWVGGEARYF RQNLLNLSFS LGLDVSADAE 501: KDRGRLRSFD EQEFEAFKRI KRELFRDMPY LLIIDNLEIE KDWWEGKDLN DLIPRNTGGT HVLITTRLPK VMTFDTVQLS ILPSSDAMVL LRGRRKKDYP 601: VEEVEVLKLF DEKLGRLSYG LWVVGSLLSE LAILPSALFE AVNKVQIEER SASPFLNLND EQYCKSNPFV AKVLAFSLAV LEQAEGNRNL LSLKMLLVGA 701: WFAPVPIPVN LLAAAAKNMP TGGNRFSKWN KCLSHTFAWC GGCGLGRRSE EDAAFLLVRL GLARLTNRQP GCWIQFHPIT QTFARRRDYI LAPKATVQGV 801: RKIDNPLLNL DHLWASAFLV FGFKSEPPLV QLQAMDMVLY IKRTALPLAI TAFTTFSRCN SALELLKVCT NVLEEVEKSF VSQIQDWRQG SLCWKKKTNK 901: KVDEYVWQDV TLLKALLLET RAKLLLRGGH FDSGEELCRT CISIRTVMLG HNHDLTLAAQ ETLAKLVRMR SKI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)