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AT5G56220.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
peroxisome 0.900
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23667806 (2013): plastid plastid thylakoid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: apoptosis; LOCATED IN: chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS class) (TAIR:AT4G23440.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IDYTeggNOG:ENOG410ZJD9EMBL:AB023029EMBL:AK117397EMBL:BT005505EMBL:CP002688EnsemblPlants:AT5G56220
EnsemblPlants:AT5G56220.1entrez:835721Gene3D:3.40.50.300GeneID:835721GO:GO:0005524GO:GO:0007165GO:GO:0016787
GO:GO:0043531Gramene:AT5G56220.1hmmpanther:PTHR32472hmmpanther:PTHR32472:SF12HOGENOM:HOG000238291IntAct:Q9FH17InterPro:IPR000157
InterPro:IPR002182InterPro:IPR003593InterPro:IPR027417KEGG:ath:AT5G56220OMA:GKEAFEGPfam:PF00931PhylomeDB:Q9FH17
Proteomes:UP000006548RefSeq:NP_200433.1SMART:SM00382SMR:Q9FH17STRING:3702.AT5G56220.1SUPFAM:SSF52200SUPFAM:SSF52540
TAIR:AT5G56220UniGene:At.7069UniProt:Q9FH17
Coordinates (TAIR10) chr5:+:22754871..22757792
Molecular Weight (calculated) 108405.00 Da
IEP (calculated) 8.68
GRAVY (calculated) -0.24
Length 973 amino acids
Sequence (TAIR10)
(BLAST)
001: MKGIEEEASL VGLTIRTSSP ASSSSKKGKE DLLQANNNAS DSSPSIKNSP FYSPSLVSPP SSAFVSALQS PYISPRATTP SITTHKPSPP LSYKGSQSDD
101: VPSSSYTPPS DQYEFSDEQP SDRKLKLSAS CTPDPAPPRI SFSFPVPRVS LAKVSVSSPA TNTKLRSSDV FIGFHGQNPN LVRFCKWLKS ELELQGIACF
201: VADRAKYSDT QSHEIADRVI CSVTYGIVVV SCSSLLNYLS LEEVRFFAQK KNLIPIFYGT GPSEIMGLLN CNAIDKECKE AIDGLIKSHE FKLEANESNW
301: RSCVGKTATI LRAKLGRKSV ADKEIVEGID ELPFPRNRSF LGREKEIIEM EMALFGNGEY LESTTPSTRG EASGQSEGLA DEESDVVPTR NGKFISLELG
401: RCSDSRSEAW SDPNGGKNSL KRLLKTKKCR NNSNCKSSTS VVCVNGVPGI GKTELALEFA YRYSQRYKMV LWVGGEARYF RQNLLNLSFS LGLDVSADAE
501: KDRGRLRSFD EQEFEAFKRI KRELFRDMPY LLIIDNLEIE KDWWEGKDLN DLIPRNTGGT HVLITTRLPK VMTFDTVQLS ILPSSDAMVL LRGRRKKDYP
601: VEEVEVLKLF DEKLGRLSYG LWVVGSLLSE LAILPSALFE AVNKVQIEER SASPFLNLND EQYCKSNPFV AKVLAFSLAV LEQAEGNRNL LSLKMLLVGA
701: WFAPVPIPVN LLAAAAKNMP TGGNRFSKWN KCLSHTFAWC GGCGLGRRSE EDAAFLLVRL GLARLTNRQP GCWIQFHPIT QTFARRRDYI LAPKATVQGV
801: RKIDNPLLNL DHLWASAFLV FGFKSEPPLV QLQAMDMVLY IKRTALPLAI TAFTTFSRCN SALELLKVCT NVLEEVEKSF VSQIQDWRQG SLCWKKKTNK
901: KVDEYVWQDV TLLKALLLET RAKLLLRGGH FDSGEELCRT CISIRTVMLG HNHDLTLAAQ ETLAKLVRMR SKI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)