AT4G11450.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF3527) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF3527); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3527 (InterPro:IPR021916); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3527) (TAIR:AT1G63520.1); Has 132 Blast hits to 129 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:6959065..6961223 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 77985.30 Da | ||||||||||||||||||||||||
| IEP (calculated) | 8.64 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.67 | ||||||||||||||||||||||||
| Length | 694 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEFGKGIDME QSPNSVLPPP RPFTESEKRT STRLKPPRRD EILRVKEGFT EISFRRYRST SCKNFPSKPL AMGDTTELRR GSVYQSSNEL FKELREPQGR 101: KDSKAKLELS RSSDASFSFR VVDSSRKGST EKRPHKTVLD GQKSLVEPCT SSNFIDICLK SGIKDRAVVL DSDDNDHKIR LPKPYSAKVD SVETSYNKDS 201: SRVRKMFDPF VKSKSLRSPL GYIGESGDQF KLGRNSERCR SMLSDYSNIH KRSNLCPPPV VNKDYTSVLK SSPVHLHCRL KMESKNGLPV FQFVSDSPEE 301: VYAAKTWKSD NGSTWVYTFS SAGSRKRSSA SVRGLTDVSK ESLLVAQMQV TCKMCSEVRK KGQDPETLMV NEFVLYDIAQ ARRSVSTKED QSLPLDTVNN 401: ASKNSVKSDS EIRNNSMSGD ASDTMKQRSQ PKRTSQSYDL EASNGTNPWS AANLHPDLEI AAIIIQDTIE KRESLKYRRG DKRLMEKTNI LGLSPIEEEK 501: KELFGSRSLE KLKVVIPRGN HGLPTTENSC PSPLIQRWRS GGGCDCGGWD MACPLMVLGN PRISCSHDQP LVENQHPLQL FVQGAKEHIP ALYMSFVEEG 601: QYDVHFHAQL STLQAFSICV AILHNTEVSD SYRNGENVQQ FSHCNSLKML IDDDVQFLVE AVTEEEEVPK PLKEAVTALQ SYMPNPPFSP ISRV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)