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AT5G53080.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; LOCATED IN: chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0457eggNOG:KOG1840EMBL:BT015832EMBL:CP002688EnsemblPlants:AT5G53080EnsemblPlants:AT5G53080.1entrez:835388
Gene3D:1.25.40.10GeneID:835388Gramene:AT5G53080.1hmmpanther:PTHR19959hmmpanther:PTHR19959:SF171HOGENOM:HOG000091065InterPro:IPR011990
InterPro:IPR013026InterPro:IPR019734KEGG:ath:AT5G53080ncoils:CoilOMA:KLAMLYTPfam:PF13374Pfam:PF13424
Pfscan:PS50005Pfscan:PS50293PhylomeDB:Q5XEY4PROSITE:PS50005PROSITE:PS50293Proteomes:UP000006548RefSeq:NP_568784.1
SMART:SM00028SMR:Q5XEY4STRING:3702.AT5G53080.1SUPFAM:SSF48452TAIR:AT5G53080UniGene:At.29574UniProt:Q5XEY4
Coordinates (TAIR10) chr5:+:21520624..21523158
Molecular Weight (calculated) 63113.60 Da
IEP (calculated) 6.87
GRAVY (calculated) -0.15
Length 564 amino acids
Sequence (TAIR10)
(BLAST)
001: MVFSNSLLSS TTSLTTWANQ SSSQSSLSPR YSTWQCVCLR NQKRKPKLYL IPARHFLSTP IDSVSSSSIT ASRYATSGVS EVQRSTSSNN VTEMEEFEME
101: LQELFNEVKS MVKIGKESDA MDLLRANYVA VKEELDSGLK GIEQAAVLDI IALGYMAVGD LKPVPALLDM INKIVDNLKD SEPLLDSVLM HVGSMYSVIG
201: KFENAILVHQ RAIRILENRY GKCNTLLVTP LLGMAKSFAS DGKATKAIGV YERTLTILER NRGSESEDLV VPLFSLGKLL LKEGKAAEAE IPFTSIVNIY
301: KKIYGERDGR VGMAMCSLAN AKCSKGDANE AVDIYRNALR IIKDSNYMTI DNSILENMRI DLAELLHFVG RGDEGRELLE ECLLINERFK GKNHPSMATH
401: LINLAASYSR SKNYVEAERL LRTCLNIMEV SVGSEGQSIT FPMLNLAVTL SQLNRDEEAE QIALKVLRIR EKAFGEDSLP VGEALDCLVS IQARLGRDDG
501: EILGLLKRVM MIQEKEFGPS AQELIVTLQK IIHFLEKLEM KDDKFKFRRR LALLRERYKQ SLSY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)