AT5G63630.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G08610.1); Has 41050 Blast hits to 40248 proteins in 2998 species: Archae - 715; Bacteria - 20319; Metazoa - 6002; Fungi - 4604; Plants - 2553; Viruses - 10; Other Eukaryotes - 6847 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:25472598..25476402 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 89631.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.33 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.49 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 788 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MWMMVSMETM IPCLLFCHFM KVLWDASKFL ASINGRWFWF LLGVNDKEEE AKSMNNFSGH RQRRNSVIVS KVMPLNFPLR IRFFAHSLSG THLSYNTSSS 101: VPLLFRIFSS GLNHFEFGSR INFSTRPNRD QPEFERRIRD GGEIRASKSL IEDEEELSNW VSGFRTGSSR GILKSDDEDE EDRSRGRNQE KRGIRNQVDS 201: FRNKRYGGDR ERGFNSRIQG KSSEASFRGR KETSFSRDRE DEKGLRKRED LRLEDESSDE DVKSLVMGDI GDLLSEDDEE EDQDYDFLKK KAVSAFGFDK 301: ENVIEADKTR NANDSYLTKT RFDHYPLSPL SLKAIKDAGY ETMTVVQEAT LPIILKGKDV LAKAKTGTGK TVAFLLPSIE VVVKSPPTSP DNKRPPILAL 401: VICPTRELAN QAATEANTLL KYHPSIGVQV VIGGTRLGLE QKRMQTNPCQ ILVATPGRLK DHIENTPGFA TRLKGVKVLV LDEADHLLDM GFRKDIERII 501: SAVPKERQTF LFSATVPEEV RQICLVALRR DHEFVNCVHE GTIETHQQVR QMHMIASLDR HFSLLYTLLR EHIMGNVDYK VIVFCTTAMV TKLVADLLGE 601: LNLNVREIHS RKPQSYRTRV SNEFRKSKGL ILVTSDVSAR GVDYPDVTLV LQVGLPKDRE QYIHRLGRTG RKGKEGEGIL LLAPWEEYFL SSLKDLPITK 701: SPLPSIDPET VKKVQKALCH VEMRNKEAAY QAWLGYYNSQ KMIGRDKDRL VELANEFSRS MGLDNPPAIP KLILGKMGLK NVPGLRAK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)