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AT5G43190.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (peroxisomal marker) v1

At5g-GFP-43190
(full-length)
RFP-peroxisomal markeroverlay

Images by John Bussel

Arabidopsis cell culture (peroxisomal marker) v2

At5g-GFP-43190
(full-length)
RFP-peroxisomal markeroverlay

Images by John Bussel
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Galactose oxidase/kelch repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 2 (InterPro:IPR011498), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G27340.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:19587eggNOG:ENOG410II5QeggNOG:ENOG4111CQFEMBL:AB017070EMBL:AK227592EMBL:BT003084EMBL:CP002688
EnsemblPlants:AT5G43190EnsemblPlants:AT5G43190.1entrez:834337Gene3D:2.120.10.80GeneID:834337Genevisible:Q9FHS6Gramene:AT5G43190.1
hmmpanther:PTHR32133hmmpanther:PTHR32133:SF88HOGENOM:HOG000112600InParanoid:Q9FHS6IntAct:Q9FHS6InterPro:IPR001810InterPro:IPR011043
InterPro:IPR011498InterPro:IPR015915InterPro:IPR017451KEGG:ath:AT5G43190OMA:WHKEMICPaxDb:Q9FHS6Pfam:PF00646
Pfam:PF07646Pfam:Q9FHS6Pfscan:PS50181PhylomeDB:Q9FHS6PRIDE:Q9FHS6PRO:PR:Q9FHS6PROSITE:PS50181
ProteinModelPortal:Q9FHS6Proteomes:UP000006548RefSeq:NP_568622.1SMART:SM00256STRING:3702.AT5G43190.1SUPFAM:0047741SUPFAM:SSF50965
SUPFAM:SSF81383TAIR:AT5G43190TIGRfam:TIGR01640TIGRFAMs:TIGR01640UniGene:At.27993UniProt:Q9FHS6
Coordinates (TAIR10) chr5:-:17340300..17341511
Molecular Weight (calculated) 45449.50 Da
IEP (calculated) 8.28
GRAVY (calculated) 0.04
Length 403 amino acids
Sequence (TAIR10)
(BLAST)
001: MFRLRAHGKK PITITTTTTT TASTFLYWSP ESSPTALSSP TNLDPNIWSN LPNHLLEHIL SLLPFKTLLT LRSISRHLRS LILSPSFISD HSFSLPSFLL
101: LSHPQSFNSF PLFNPNLISW CTLPLPRSLS LTCASSLLSS SNGLLCFSLS PSSVSSLSIF NPLTRSSRSI KLPCYPFPFE LLSLVTSPKG YKIFTLCSSS
201: SAASSRSVCL YDSGDRSWRK FGGVDQVLPR GFNQDGVFYN GSLYFARSEP FLIVSVDLND GKWTTATGDG VFPADDEITF ARLVSDPEKK ILYMVGGIGS
301: NGICRSIKIW EFKEETESWI EVETLPDIVC RKFTSVCYHN YEHVYCLWHK EMICVCCYNW PEILFFHVGR RTWHWVPKCP SLPEKWSCGF RWFSFVPSLS
401: ASV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)