AT3G06180.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ribosomal protein L34e superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ribosomal protein L34e superfamily protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34e (InterPro:IPR008195); BEST Arabidopsis thaliana protein match is: Ribosomal protein L34e superfamily protein (TAIR:AT5G19025.1); Has 84 Blast hits to 84 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 73; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:1871705..1873554 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 26468.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.99 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.18 | ||||||||||||||||||||||||||||||||
| Length | 241 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLHLLLLSDE EHSTTNSMPP SSSASRSASN HSSSSSSSSS SLHLCKHSPS ATLDLLILIL VLFSGAFLLS SYFSYLFHSF SLLSSHFPSL SSLIFSDDED 101: LSSIPPASYF FAFAVFFAAS IAFLDLCCGP RSRKCRNPKC KGLKKAMEFD LQLQTEECVK SGATKEIDRL PWKGGSESNP DYECLRAELR RMAPPNGRAV 201: LLFRSRCGCP VAKLEGWGPK RGRRHKKSQA NLALKGGVDH R |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)