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AT5G40250.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.996
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G23980.1); Has 9426 Blast hits to 9402 proteins in 296 species: Archae - 0; Bacteria - 0; Metazoa - 2235; Fungi - 712; Plants - 5071; Viruses - 76; Other Eukaryotes - 1332 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AB010699EMBL:AK176313EMBL:CP002688EnsemblPlants:AT5G40250EnsemblPlants:AT5G40250.1
entrez:834023Gene3D:3.30.40.10GeneID:834023Genevisible:Q9FL07GO:GO:0008270GO:GO:0016021GO:GO:0016567
Gramene:AT5G40250.1hmmpanther:PTHR14155hmmpanther:PTHR14155:SF128HOGENOM:HOG000239562InParanoid:Q9FL07InterPro:IPR001841InterPro:IPR013083
iPTMnet:Q9FL07KEGG:ath:AT5G40250OMA:FHYKEIVPaxDb:Q9FL07Pfam:PF13639Pfam:Q9FL07Pfscan:PS50089
PhylomeDB:Q9FL07PRIDE:Q9FL07PRO:PR:Q9FL07PROSITE:PS50089ProteinModelPortal:Q9FL07Proteomes:UP000006548RefSeq:NP_198841.1
SMART:SM00184SMR:Q9FL07SUPFAM:SSF57850TAIR:AT5G40250TMHMM:TMhelixUniGene:At.51073UniPathway:UPA00143
UniProt:Q9FL07
Coordinates (TAIR10) chr5:+:16086056..16087186
Molecular Weight (calculated) 41794.60 Da
IEP (calculated) 5.94
GRAVY (calculated) -0.40
Length 376 amino acids
Sequence (TAIR10)
(BLAST)
001: MSWVRFTIEQ KDGNFAYPPP FYKDPILSPP SPPPPSSGNR ISPAVLFVIV ILAVLFFISG LLHLLVRFLI KHPSATASSR SNRFPEISTS DALQRQLQQL
101: FHLNDSGLDQ AFIDALPVFH YKEIVGSAGG GGGNGAAQEP FDCAVCLCEF SEKDKLRLLP MCSHAFHLNC IDTWLQSNST CPLCRGTLFS PGFSMENPMF
201: DFDDIREDEE GVTENGSQKT MEIQEIVVEK GVLPVRLGKF KRLDNVGNGQ GQDVVAGGET SSSNLDARRC FSMGSYQYIL GNSELKVPFA NDRLPRLKPQ
301: DKESEQTGNS SSEDNKKINT VAKGESFSVS KIWLWPKKDK FSSDAQRRLP SSSLNVDDLP KLPWMEEHKK LENDGR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)