AT4G20880.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2); BEST Arabidopsis thaliana protein match is: ethylene-responsive nuclear protein -related (TAIR:AT5G44350.1); Has 2205 Blast hits to 1471 proteins in 187 species: Archae - 2; Bacteria - 107; Metazoa - 617; Fungi - 120; Plants - 79; Viruses - 12; Other Eukaryotes - 1268 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:11179389..11180606 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45670.40 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.46 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||
| Length | 405 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPLPWKKSKS SRISRFVSDF QQSPKHGGSL VVETGFPTSL IDLFVKNRDR LKKQSSKRNN KNNKAQTETR VLSPPPPHMS LQRRMSLPSK LDPALVTEDS 101: PLVRKIEETS VPEIIHEDDG GHRGGGGGGC VLIVVVFKVF MVAVLALSTK KLAVGITLSA FALLFLELAV ARVFTYLNLC PDAQIRIDSL IDKLIGKRHK 201: EKLEEEEEST STHDRRNNVY FEIIEEPREE IRVTPQSDSS SLEKAKLVVD EKKEMQTIRD VMFKTEKSKS AKLKSKIVKK IVPKKLRSYK KKKKMKNKEK 301: EEEEVELETE EEGSMTEVSS LYSDERIGSE ISERDDLSSN PPFLESCTEV EEEEETGPKE DLTKVIGLIV IVLVGLLCGK VFAIGLTLSW CLILRVFCCK 401: SQTSF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)