suba logo
AT5G35910.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain; FUNCTIONS IN: 3'-5' exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Helicase/RNase D C-terminal, HRDC domain (InterPro:IPR002121), 3'-5' exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (TAIR:AT1G54440.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0349eggNOG:KOG2206EMBL:AB005236EMBL:AB025602EMBL:CP002688EMBL:EU240663EnsemblPlants:AT5G35910
EnsemblPlants:AT5G35910.1entrez:833577Gene3D:3.30.420.10GeneID:833577Genevisible:A9LLI7GO:GO:0000166GO:GO:0000176
GO:GO:0003676GO:GO:0005634GO:GO:0005730GO:GO:0005737GO:GO:0006396GO:GO:0008408GO:GO:0043633
GO:GO:0080188GO:GO:1902466Gramene:AT5G35910.1hmmpanther:PTHR12124hmmpanther:PTHR12124:SF47HOGENOM:HOG000027797InParanoid:A9LLI7
InterPro:IPR002121InterPro:IPR002562InterPro:IPR010997InterPro:IPR012337InterPro:IPR012588iPTMnet:A9LLI7KEGG:ath:AT5G35910
KO:K12591OMA:WLQRSEDPaxDb:A9LLI7Pfam:PF00570Pfam:PF01612Pfam:PF08066Pfscan:PS50967
PhylomeDB:A9LLI7PRIDE:A9LLI7PRO:PR:A9LLI7PROSITE:PS50967ProteinModelPortal:A9LLI7Proteomes:UP000006548RefSeq:NP_198440.2
SMART:SM00341SMART:SM00474SMR:A9LLI7SUPFAM:SSF47819SUPFAM:SSF53098TAIR:AT5G35910UniGene:At.28068
UniProt:A9LLI7
Coordinates (TAIR10) chr5:-:14029871..14035405
Molecular Weight (calculated) 97894.60 Da
IEP (calculated) 5.76
GRAVY (calculated) -0.61
Length 870 amino acids
Sequence (TAIR10)
(BLAST)
001: MSDGNMDVDE SPVSWKVKSL EKLIDGSSFS STLSRLSSSS RLIPTSRDFH FYYNFDEFKR PIDEITGTSQ STLATIGDSE QVWGKSMKFP GDVDDVYAED
101: WLCNVNDELI ERFDVSVDEF QRIRKKEKEI GRSVVADDGD DGFQMVYGKK KKPVGNVVTG SAAVNGGGSV IDVKMAERDK NSSGKAKVPF HVPTIKKPQE
201: EYNILVNNAN LPFEHVWLER SEDDLRAMHP LEKFSVLDFV DKDVNEMEPV KPLPLEQTPF KFVQEVKDLK ELVAKLRSVE EFAVDLEHNQ YRSFQGLTCL
301: MQISTRTEDY IVDTFKLRIH IGPYLREIFK DPKKKKVMHG ADRDIIWLQR DFGIYVCNLF DTGQASRVLN LERNSLEFLL QHFCGVTANK EYQNADWRIR
401: PLPEEMTRYA REDTHYLLYI YDLIKLELQR MAKDDAHTDS PLLEVYKRSY DVCTQLYEKE LLTENSYLHV YGLQAAGFNA AQLAIVAGLC EWRDFIARAE
501: DESTGYVLPN KVLLEIAKEM PDSVGKLRRM LKSKHPYIER NVDSVVSVIR QSMQHYAAFE SAALSLKDVS PGNVMDKNIE PISEKKDLHT GDVASPSLKE
601: NSSQLESTRD LIMGAANTNE GRGLGSGLFG SAKVSAAVRI SKKPSSGLGA LLGNAASKKK SRTDEKVKED VKLEQIRSSV NLSFHSFTEK VPDSKSTSET
701: SPKVYGKPEE MSSTMPASVS KEDGVKELKD DSEEASEIVG TSGRVSESKV SSSEMGDIIL LENGDEKKVD AEDEPMSLSE LSTNFQKCFK SMNKSKKAQK
801: QTEFLNIEPF DYEAARKEVK FGEGHKGRQG KREAAAGQKK GSTQEQSEFG QGKRRQAFPA SGNRSMSFKN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)